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Partial voluming (PV) is arguably the last crucial unsolved problem in Bayesian segmentation of brain MRI with probabilistic atlases. PV occurs when voxels contain multiple tissue classes, giving rise to image intensities that may not be…

Computer Vision and Pattern Recognition · Computer Science 2021-04-09 Benjamin Billot , Eleanor D. Robinson , Adrian V. Dalca , Juan Eugenio Iglesias

Reconstructing 3D fetal MR volumes from motion-corrupted stacks of 2D slices is a crucial and challenging task. Conventional slice-to-volume reconstruction (SVR) methods are time-consuming and require multiple orthogonal stacks for…

Computer Vision and Pattern Recognition · Computer Science 2026-04-13 Yinsong Wang , Thomas Fletcher , Xinzhe Luo , Aine Travers Dineen , Rhodri Cusack , Chen Qin

Magnetic resonance imaging (MRI) enables 3-D imaging of anatomical structures. However, the acquisition of MR volumes with high spatial resolution leads to long scan times. To this end, we propose volumetric super-resolution forests (VSRF)…

Computer Vision and Pattern Recognition · Computer Science 2018-02-16 Aline Sindel , Katharina Breininger , Johannes Käßer , Andreas Hess , Andreas Maier , Thomas Köhler

We present a robust technique for calculating regional volume changes within the lung from X-ray radiograph sequences captured during ventilation, without the use of computed tomography (CT). This technique is based on the change in…

Apnea-bradycardia is one of the major clinical early indicators of late-onset sepsis occurring in approximately 7% to 10% of all neonates and in more than 25% of very low birth weight infants in NICU. The objective of this paper was to…

Quantitative Methods · Quantitative Biology 2016-05-18 Yuan Wang , Guy Carrault , Alain Beuchee , Nathalie Costet , Huazhong Shu , Lotfi Senhadji

Recovering high-fidelity 3D images from sparse or degraded 2D images is a fundamental challenge in medical imaging, with broad applications ranging from 3D ultrasound reconstruction to MRI super-resolution. In the context of fetal MRI,…

Computer Vision and Pattern Recognition · Computer Science 2025-12-17 Maik Dannecker , Steven Jia , Nil Stolt-Ansó , Nadine Girard , Guillaume Auzias , François Rousseau , Daniel Rueckert

4D Flow MRI is the state of the art technique for measuring blood flow, and it provides valuable information for inverse problems in the cardiovascular system. However, 4D Flow MRI has a very long acquisition time, straining healthcare…

Numerical Analysis · Mathematics 2025-12-09 Miriam Löcke , Pim van Ooij , Cristóbal Bertoglio

Vascular remodelling is inherent to the pathogenesis of many diseases including cancer, neurodegeneration, fibrosis, hypertension, and diabetes. In this paper, a new susceptibility-contrast based MRI approach is established to analyse…

Purpose: A novel subspace-based reconstruction method for frequency-modulated balanced steady-state free precession (fmSSFP) MRI is presented. In this work, suitable data acquisition schemes, subspace sizes, and efficiencies for banding…

In the field of human biometry, accurately estimating the volume of the whole body and its individual segments is of fundamental importance. Such measurements support a wide range of applications that include assessing health, optimizing…

Image and Video Processing · Electrical Eng. & Systems 2025-09-15 Giulia Bassani , Emilio Maoddi , Usman Asghar , Carlo Alberto Avizzano , Alessandro Filippeschi

Detailed anatomical information is essential to optimize medical decisions for surgical and pre-operative planning in patients with congenital heart disease. The visualization techniques commonly used in clinical routine for the exploration…

Graphics · Computer Science 2023-08-15 Irum Baseer , Israel Valverde , Abdel H. Moustafa , Josep Blat , Oscar Camara

Purpose: To develop and evaluate a free-breathing respiratory motion compensated 4D (3D+respiration) $T_2$-weighted turbo spin echo sequence with application to radiology and MR-guided radiotherapy. Methods: k-space data are continuously…

Purpose: This work aims to enable real-time automated intra-uterine volumetric reporting and fetal weight estimation for fetal MRI, deployed directly on the scanner. Methods: A multi-region segmentation nnUNet was trained on 146 bSSFP…

Compressed sensing (CS) is a new signal acquisition paradigm that enables the reconstruction of signals and images from a low number of samples. A particularly exciting application of CS is Magnetic Resonance Imaging (MRI), where CS…

Information Theory · Computer Science 2016-08-17 Samuel Birns , Bohyun Kim , Stephanie Ku , Kevin Stangl , Deanna Needell

In many pediatric fMRI studies, cardiac signals are often missing or of poor quality. A tool to extract Heart Rate Variation (HRV) waveforms directly from fMRI data, without the need for peripheral recording devices, would be highly…

Image and Video Processing · Electrical Eng. & Systems 2025-02-12 Abdoljalil Addeh , Karen Ardila , Rebecca J Williams , G. Bruce Pike , M. Ethan MacDonald

Ultrasound localization microscopy offers new radiation-free diagnostic tools for vascular imaging deep within the tissue. Sequential localization of echoes returned from inert microbubbles with low-concentration within the bloodstream…

Medical Physics · Physics 2018-04-11 Oren Solomon , Ruud J. G. van Sloun , Hessel Wijkstra , Massimo Mischi , Yonina C. Eldar

With the increased need for multi-center magnetic resonance imaging studies, problems arise related to differences in hardware and software between centers. Namely, current algorithms for brain volume quantification are unreliable for the…

Image and Video Processing · Electrical Eng. & Systems 2019-11-12 Maria Ines Meyer , Ezequiel de la Rosa , Koen Van Leemput , Diana M. Sima

Dynamic MRI is a technique of acquiring a series of images continuously to follow the physiological changes over time. However, such fast imaging results in low resolution images. In this work, abdominal deformation model computed from…

Image and Video Processing · Electrical Eng. & Systems 2019-10-11 Chompunuch Sarasaen , Soumick Chatterjee , Mario Breitkopf , Domenico Iuso , Georg Rose , Oliver Speck

Accurately estimating and correcting the motion artifacts are crucial for 3D image reconstruction of the abdominal and in-utero magnetic resonance imaging (MRI). The state-of-art methods are based on slice-to-volume registration (SVR) where…

Image and Video Processing · Electrical Eng. & Systems 2019-08-29 Tong Zhang , Laurence H. Jackson , Alena Uus , James R. Clough , Lisa Story , Mary A. Rutherford , Joseph V. Hajnal , Maria Deprez

Cardiovascular diseases are among the leading causes of death globally. Cardiac left ventricle (LV) quantification is known to be one of the most important tasks for the identification and diagnosis of such pathologies. In this paper, we…

Computer Vision and Pattern Recognition · Computer Science 2018-08-27 Alejandro Debus , Enzo Ferrante