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Understanding decision-making in clinical environments is of paramount importance if we are to bring the strengths of machine learning to ultimately improve patient outcomes. Several factors including the availability of public data, the…

Machine Learning · Computer Science 2022-03-15 Alex J. Chan , Ioana Bica , Alihan Huyuk , Daniel Jarrett , Mihaela van der Schaar

Many science advances have been possible thanks to the use of research software, which has become essential to advancing virtually every Science, Technology, Engineering and Mathematics (STEM) discipline and many non-STEM disciplines…

Software Engineering · Computer Science 2019-02-26 Daniel S. Katz , Patrick Aerts , Neil P. Chue Hong , Anshu Dubey , Sandra Gesing , Henry J. Neeman , David E. Pearah

We introduce a Python framework designed to automate the most common tasks associated with the extraction and upscaling of the statistics of single-impact crater functions to inform coefficients of continuum equations describing surface…

Computational Physics · Physics 2014-10-31 Scott A. Norris

Open-source scientific software is a major driver of scientific progress, yet its development and reuse remain difficult in collaborative settings. Researchers repeatedly face four recurring challenges: discovering and reproducing existing…

Digital Libraries · Computer Science 2026-04-22 Jan Philipp Albrecht , Deborah Schmidt , Lucas Rieckert , Maximilian Otto , Kyle Harrington

Computer simulation has become one of the most important tools in scientific research in many disciplines. Benefiting from the dynamical trajectories regulated by versatile interatomic interactions, various material properties can be…

Materials Science · Physics 2024-11-28 Y. -C. Hu , J. Tian

The study of complex many-body systems via analysis of the trajectories of the units that dynamically move and interact within them is a non-trivial task. The workflow for extracting meaningful information from the raw trajectory data is…

Materials Science · Physics 2025-10-31 Simone Martino , Matteo Becchi , Andrew Tarzia , Daniele Rapetti , Giovanni M. Pavan

As software systems increase in complexity, conventional monitoring methods struggle to provide a comprehensive overview or identify performance issues, often missing unexpected problems. Observability, however, offers a holistic approach,…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-08-29 Bartosz Balis , Konrad Czerepak , Albert Kuzma , Jan Meizner , Lukasz Wronski

Software development relies heavily on text-based communication, making sentiment analysis a valuable tool for understanding team dynamics and supporting trustworthy AI-driven analytics in requirements engineering. However, existing…

Software Engineering · Computer Science 2025-07-11 Martin Obaidi , Marc Herrmann , Jil Klünder , Kurt Schneider

Managing and preparing complex data for deep learning, a prevalent approach in large-scale data science can be challenging. Data transfer for model training also presents difficulties, impacting scientific fields like genomics, climate…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-04-09 Arup Kumar Sarker , Aymen Alsaadi , Niranda Perera , Mills Staylor , Gregor von Laszewski , Matteo Turilli , Ozgur Ozan Kilic , Mikhail Titov , Andre Merzky , Shantenu Jha , Geoffrey Fox

HEP Cluster is designed and implemented in Scientific Linux Cern 5.5 to grant High Energy Physics researchers one place where they can go to undertake a particular task or to provide a parallel processing architecture in which CPU resources…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-10-30 Vivek Chalotra , Anju Bhasin , Anik Gupta , Sanjeev Singh Sambyal

The rapid development of computation power and machine learning algorithms has paved the way for automating scientific discovery with a scanning probe microscope (SPM). The key elements towards operationalization of automated SPM are the…

HEALPix -- the Hierarchical Equal Area isoLatitude Pixelization -- has become a standard in high-energy and gravitational wave astronomy. Originally developed to improve the efficiency of all-sky Fourier analyses, it is now also utilized to…

Instrumentation and Methods for Astrophysics · Physics 2022-05-18 I. Martinez-Castellanos , Leo P. Singer , E. Burns , D. Tak , Alyson Joens , Judith L. Racusin , Jeremy S. Perkins

Large High Energy Physics (HEP) experiments adopted a distributed computing model more than a decade ago. WLCG, the global computing infrastructure for LHC, in partnership with the US Open Science Grid, has achieved data management at the…

We present PyOECP, a Python-based flexible open-source software for estimating and modeling the complex permittivity obtained from the open-ended coaxial probe (OECP) technique. The transformation of the measured reflection coefficient to…

Instrumentation and Detectors · Physics 2021-10-01 Tae Jun Yoon , Katie A. Maerzke , Robert P. Currier , Alp T. Findikoglu

As supercomputers continue to grow in scale and capabilities, it is becoming increasingly difficult to isolate processor and system level causes of performance degradation. Over the last several years, a significant number of performance…

Distributed, Parallel, and Cluster Computing · Computer Science 2009-03-03 Hari K. Pyla , Bharath Ramesh , Calvin J. Ribbens , Srinidhi Varadarajan

Analysis on HEP data is an iterative process in which the results of one step often inform the next. In an exploratory analysis, it is common to perform one computation on a collection of events, then view the results (often with…

High Energy Physics - Experiment · Physics 2023-02-21 Aryan Roy , Jim Pivarski , Chad Wells Freer

This paper describes a deep-SDM framework, MALPOLON. Written in Python and built upon the PyTorch library, this framework aims to facilitate training and inferences of deep species distribution models (deep-SDM) and sharing for users with…

Machine Learning · Computer Science 2024-09-27 Theo Larcher , Lukas Picek , Benjamin Deneu , Titouan Lorieul , Maximilien Servajean , Alexis Joly

We introduce hyppo, a unified library for performing multivariate hypothesis testing, including independence, two-sample, and k-sample testing. While many multivariate independence tests have R packages available, the interfaces are…

The development of external evaluation criteria for soft clustering (SC) has received limited attention: existing methods do not provide a general approach to extend comparison measures to SC, and are unable to account for the uncertainty…

Machine Learning · Computer Science 2022-06-22 Andrea Campagner , Davide Ciucci , Thierry Denœux

Power system operators need new, efficient operational tools to use the flexibility of distributed resources and deal with the challenges of highly uncertain and variable power systems. Transmission system operators can consider the…

Software Engineering · Computer Science 2025-07-01 Demetris Chrysostomou , Jose Luis Rueda Torres , Jochen Lorenz Cremer
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