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Diffusion in cell biology is important and complicated. Diffusing particles must contend with a complex environment as they make their way through the cell. We analyze a particular type of complexity that arises when diffusing particles…

Subcellular Processes · Quantitative Biology 2018-09-06 Ben Fogelson , James P. Keener

We introduce numerical methods for simulating the diffusive motion of rigid bodies of arbitrary shape immersed in a viscous fluid. We parameterize the orientation of the bodies using normalized quaternions, which are numerically robust,…

Soft Condensed Matter · Physics 2015-10-28 Steven Delong , Florencio Balboa Usabiaga , Aleksandar Donev

Numerical simulations of positively-buoyant suspension in a horizontally rotating cylinder were performed to study the formation of radial and axial patterns. The order parameter for low-frequency segregated phase and dispersed phase is…

Soft Condensed Matter · Physics 2018-04-11 Sudarshan Konidena , Jonghoon Lee , K. Anki Reddy , Anugrah Singh

The subject of this thesis is the study of dissipative dynamics and their properties in particle physics, dealing with neutral B-mesons, neutron interferometry and neutrino physics. Modified expressions for the relevant phenomenological…

High Energy Physics - Phenomenology · Physics 2007-05-23 Raffaele Romano

We study the motion of a solid particle immersed in a Newtonian fluid and confined between two parallel elastic membranes possessing shear and bending rigidity. The hydrodynamic mobility depends on the frequency of the particle motion due…

Fluid Dynamics · Physics 2016-08-03 Abdallah Daddi-Moussa-Ider , Achim Guckenberger , Stephan Gekle

Starting from the many-particle Smoluchowski equation, we derive dynamical density functional theory for Brownian particles with an arbitrary shape. Both passive and active (self-propelled) particles are considered. The resulting theory…

Soft Condensed Matter · Physics 2014-01-28 Raphael Wittkowski , Hartmut Löwen

We investigate the dynamics of a single deformable self-propelled particle which undergoes a spinning motion in a two-dimensional space. Equations of motion are derived from the symmetry argument for three kinds of variables. One is a…

Soft Condensed Matter · Physics 2013-07-09 Mitsusuke Tarama , Takao Ohta

A system of degenerate drift-diffusion equations for the electron, hole, and oxygen vacancy densities, coupled to the Poisson equation for the electric potential, is analyzed in a three-dimensional bounded domain with mixed…

Analysis of PDEs · Mathematics 2023-11-29 Ansgar Jüngel , Martin Vetter

We analyze the dynamics of a tracer particle embedded in a bath of hard spheres confined in a channel of varying section. By means of Brownian dynamics simulations we apply a constant force on the tracer particle and discuss the dependence…

Soft Condensed Matter · Physics 2018-11-14 Antonio M. Puertas , Paolo Malgaretti , Ignacio Pagonabarraga

We derive equations of motion for the mean-squared displacement (MSD) of an active Brownian particle (ABP) in a crowded environment modeled by a dense system of passive Brownian particles, and of a passive tracer particle in a dense…

Soft Condensed Matter · Physics 2021-07-27 Julian Reichert , Thomas Voigtmann

We study a system of interacting particles in a periodically moving external potential, within the simplest possible description of paradigmatic symmetric exclusion process on a ring. The model describes diffusion of hardcore particles…

Statistical Mechanics · Physics 2014-04-17 Rakesh Chatterjee , Sakuntala Chatterjee , Punyabrata Pradhan , S. S. Manna

We introduce a model of self-propelled particles carrying out a Brownian motion with a diffusion coefficient which depends on the local density of particles within a certain finite radius. Numerical simulations show that in a range of…

Statistical Mechanics · Physics 2009-11-11 Cristobal Lopez

We consider finite systems of interacting Brownian particles including active friction in the framework of nonlinear dynamics and statistical/stochastic theory. First we study the statistical properties for $1-d$ systems of masses connected…

Statistical Mechanics · Physics 2007-05-23 Werner Ebeling

The problem of Brownian motion in a periodic potential, under the influence of external forcing, which is either random or periodic in time, is studied in this paper. Multiscale techniques are used to derive general formulae for the steady…

Statistical Mechanics · Physics 2007-05-23 G. A. Pavliotis

We consider the Cosserat continuum in its finite strain setting and discuss the dislocation density tensor as a possible alternative curvature strain measure in three-dimensional Cosserat models and in Cosserat shell models. We establish a…

Analysis of PDEs · Mathematics 2016-02-19 Mircea Birsan , Patrizio Neff

We use the system-plus-reservoir approach to study the quantum dynamics of a bipartite continuous variable system (two generic particles). We present an extension of the traditional model of a bath of oscillators which is capable of…

Quantum Physics · Physics 2015-05-13 O. S. Duarte , A. O. Caldeira

The transport of a dimer, consisting of two Brownian particles bounded by a harmonic potential, moving on a periodic substrate is investigated both numerically and analytically. The mobility and diffusion of the dimer center of mass present…

Statistical Mechanics · Physics 2008-08-03 E. Heinsalu , M. Patriarca , F. Marchesoni

We synthesize colloidal particles with various anisotropic shapes and track their orientationally resolved Brownian trajectories using confocal microscopy. An analysis of appropriate short-time correlation functions provides direct access…

Soft Condensed Matter · Physics 2014-01-28 Daniela J. Kraft , Raphael Wittkowski , Borge ten Hagen , Kazem V. Edmond , David J. Pine , Hartmut Löwen

Generalizing recent work on isotropic tensor fields in isotropic and achiral condensed matter systems from two to arbitrary dimensions we address both mathematical aspects assuming perfectly isotropic systems and applications focusing on…

Soft Condensed Matter · Physics 2024-10-22 J. P. Wittmer

The Active Brownian Particle (ABP) model exemplifies a wide class of active matter particles. In this work, we demonstrate how this model can be cast into a field theory in both two and three dimensions. Our aim is manifold: we wish both to…

Soft Condensed Matter · Physics 2022-12-26 Ziluo Zhang , Lili Fehértói-Nagy , Maria Polackova , Gunnar Pruessner