Related papers: On Abelian Longest Common Factor with and without …
Efficient optimal prefix coding has long been accomplished via the Huffman algorithm. However, there is still room for improvement and exploration regarding variants of the Huffman problem. Length-limited Huffman coding, useful for many…
A common complaint about adaptive prefix coding is that it is much slower than static prefix coding. Karpinski and Nekrich recently took an important step towards resolving this: they gave an adaptive Shannon coding algorithm that encodes…
We introduce linear probing hashing schemes that construct a hash table of size $n$, with constant load factor $\alpha$, on which the worst-case unsuccessful search time is asymptotically almost surely $O(\log \log n)$. The schemes employ…
Canonical Huffman code is an optimal prefix-free compression code whose codewords enumerated in the lexicographical order form a list of binary words in non-decreasing lengths. Gagie et al. (2015) gave a representation of this coding…
The {\em longest common subsequence (LCS)} problem is a classic and well-studied problem in computer science. LCS is a central problem in stringology and finds broad applications in text compression, error-detecting codes and biological…
A binary string of length $2^k$ induces the Boolean function of $k$ variables whose Shannon expansion is the given binary string. This Boolean function then is representable via a unique reduced ordered binary decision diagram (ROBDD). The…
Let $S$ be a string of length $n$. In this paper we introduce the notion of \emph{string attractor}: a subset of the string's positions $[1,n]$ such that every distinct substring of $S$ has an occurrence crossing one of the attractor's…
Indexing highly repetitive strings (i.e., strings with many repetitions) for fast queries has become a central research topic in string processing, because it has a wide variety of applications in bioinformatics and natural language…
Large-alphabet strings are common in scenarios such as information retrieval and natural-language processing. The efficient storage and processing of such strings usually introduces several challenges that are not witnessed in…
The Kolmogorov complexity of x, denoted C(x), is the length of the shortest program that generates x. For such a simple definition, Kolmogorov complexity has a rich and deep theory, as well as applications to a wide variety of topics…
We consider two natural problems about nondeterministic finite automata. First, given such an automaton M of n states, and a length l, does M accept a word of length l? We show that the classic problem of triangle-free graph recognition…
The Run Length Encoding (RLE) compression method is a long standing simple lossless compression scheme which is easy to implement and achieves a good compression on input data which contains repeating consecutive symbols. In its pure form…
Suppose we want to seek the longest common subsequences (LCSs) of two strings as informative patterns that explain the relationship between the strings. The dynamic programming algorithm gives us a table from which all LCSs can be extracted…
Given a source of iid samples of edges of an input graph $G$ with $n$ vertices and $m$ edges, how many samples does one need to compute a constant factor approximation to the maximum matching size in $G$? Moreover, is it possible to obtain…
We present a compressed representation of tries based on top tree compression [ICALP 2013] that works on a standard, comparison-based, pointer machine model of computation and supports efficient prefix search queries. Namely, we show how to…
LZ77-based compression schemes compress the input text by replacing factors in the text with an encoded reference to a previous occurrence formed by the couple (length, offset). For a given factor, the smallest is the offset, the smallest…
We present a new algorithm for computing the Lempel-Ziv Factorization (LZ77) of a given string of length $N$ in linear time, that utilizes only $N\log N + O(1)$ bits of working space, i.e., a single integer array, for constant size integer…
We give an algorithm to compute a one-dimensional shape-constrained function that best fits given data in weighted-$L_{\infty}$ norm. We give a single algorithm that works for a variety of commonly studied shape constraints including…
The Binary Jumbled String Matching problem is defined as: Given a string $s$ over $\{a,b\}$ of length $n$ and a query $(x,y)$, with $x,y$ non-negative integers, decide whether $s$ has a substring $t$ with exactly $x$ $a$'s and $y$ $b$'s.…
In this paper we define a new problem, motivated by computational biology, $LCSk$ aiming at finding the maximal number of $k$ length $substrings$, matching in both input strings while preserving their order of appearance. The traditional…