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In Molecular Communications via Diffusion (MCvD), messenger molecules are emitted by a transmitter and propagate randomly through the fluidic environment. In biological systems, the environment can be considered a bounded space, surrounded…

Information Theory · Computer Science 2024-04-29 Anil Kamber , H. Birkan Yilmaz , Ali Emre Pusane , Tuna Tugcu

This survey paper focuses on modulation aspects of molecular communication, an emerging field focused on building biologically-inspired systems that embed data within chemical signals. The primary challenges in designing these systems are…

Emerging Technologies · Computer Science 2020-12-29 Mehmet Sukru Kuran , H. Birkan Yilmaz , Ilker Demirkol , Nariman Farsad , Andrea Goldsmith

Despite the remarkable generative capabilities of diffusion models, their integration into safety-critical or scientifically rigorous applications remains hindered by the need to ensure compliance with stringent physical, structural, and…

Machine Learning · Computer Science 2025-06-03 Jacob K. Christopher , Michael Cardei , Jinhao Liang , Ferdinando Fioretto

In diffusion-based molecular communication, information transport is governed by diffusion through a fluid medium. The achievable data rates for these channels are very low compared to the radio-based communication system, since diffusion…

Emerging Technologies · Computer Science 2016-03-15 Bon-Hong Koo , Changmin Lee , H. Birkan Yilmaz , Nariman Farsad , Andrew Eckford , Chan-Byoung Chae

In this paper, a cooperative diffusion-based molecular communication system is considered where distributed receivers collaboratively determine a transmitter's signal. In this system, the receivers first make local hard decisions about the…

Information Theory · Computer Science 2017-03-20 Yuting Fang , Adam Noel , Nan Yang , Andrew W. Eckford , Rodney A. Kennedy

In diffusion-based molecular communication, information is transferred from a transmitter to a receiver using molecular carriers. The low achievable data rate is the main disadvantage of diffusion-based molecular over radio-based…

Emerging Technologies · Computer Science 2018-09-18 Tayyebeh Jahani-Nezhad , Foroogh S. Tabataba

Molecular communication underpins nano-scale communications in nanotechnology. The combination of multinanomachines to form nano-networks is one of the main enabling methods. Due to the importance of source localization in establishing…

Information Theory · Computer Science 2022-03-17 Yuqi Miao , Wence Zhang , Xu Bao

Machine learning approaches to Structure-Based Drug Design (SBDD) have proven quite fertile over the last few years. In particular, diffusion-based approaches to SBDD have shown great promise. We present a technique which expands on this…

Machine Learning · Computer Science 2024-07-01 Matan Halfon , Eyal Rozenberg , Ehud Rivlin , Daniel Freedman

Quantum-mechanical methods are widely used for understanding molecular interactions throughout biology, chemistry, and materials science. Quantum diffusion Monte Carlo (DMC) and coupled cluster with single, double, and perturbative triple…

Significant inter-symbol interference (ISI) challenges the achievement of reliable, high data-rate molecular communication via diffusion. In this paper, a hybrid modulation based on pulse position and concentration is proposed to mitigate…

Information Theory · Computer Science 2021-04-21 Mustafa Can Gursoy , Daewon Seo , Urbashi Mitra

Molecular dynamics (MD) has long been the de facto choice for simulating complex atomistic systems from first principles. Recently deep learning models become a popular way to accelerate MD. Notwithstanding, existing models depend on…

Computational Engineering, Finance, and Science · Computer Science 2023-01-10 Fang Wu , Stan Z. Li

Diffusive molecular communications (DiMC) have recently gained attention as a candidate for nano- to micro- and macro-scale communications due to its simplicity and energy efficiency. As signal propagation is solely enabled by Brownian…

Information Theory · Computer Science 2021-01-11 Mustafa Can Gursoy , Masoumeh Nasiri-Kenari , Urbashi Mitra

We investigate the consensus problem in a network where nodes communicate via diffusion-based molecular communication (DbMC). In DbMC, messages are conveyed via the variation in the concentration of molecules in the medium. Every node…

Information Theory · Computer Science 2011-03-03 Arash Einolghozati , Mohsen Sardari , Ahmad Beirami , Faramarz Fekri

In this paper, a diffusion-based molecular communication channel between two nano-machines is considered. The effect of the amount of memory on performance is characterized, and a simple memory-limited decoder is proposed and its…

Biological Physics · Physics 2014-05-05 Reza Mosayebi , Hamidreza Arjmandi , Amin Gohari , Masoumeh Nasiri Kenari , Urbashi Mitra

Intersymbol Interference (ISI) has a detrimental impact on any Molecular Communication via Diffusion (MCvD) system. Also, the receiver noise can severely degrade the MCvD channel performance. However, the channel codes proposed in the…

Information Theory · Computer Science 2025-02-28 Tamoghno Nath , Krishna Gopal Benerjee , Adrish Banerjee

Air-based molecular communication (MC) has the potential to be one of the first MC systems to be deployed in real-world applications, enabled by commercially available sensors. However, these sensors usually exhibit non-linear and…

Molecular communication (MC) is a new communication engineering paradigm where molecules are employed as information carriers. MC systems are expected to enable new revolutionary applications such as sensing of target substances in…

Emerging Technologies · Computer Science 2018-12-14 Vahid Jamali , Arman Ahmadzadeh , Wayan Wicke , Adam Noel , Robert Schober

Achieving precise synchronisation between transmitters and receivers is particularly challenging in diffusive molecular communication environments. To this end, point-to-point molecular communication system design is examined wherein…

Signal Processing · Electrical Eng. & Systems 2018-11-09 Tze-Yang Tung , Urbashi Mitra

In a diffusion-based molecular communication network, transmitters and receivers communicate by using signalling molecules (or ligands) in a fluid medium. This paper assumes that the transmitter uses different chemical reactions to generate…

Information Theory · Computer Science 2019-04-25 Chun Tung Chou

This paper considers the scenario of a targeted drug delivery system, which consists of deploying a number of biological nanomachines close to a biological target (e.g. a tumor), able to deliver drug molecules in the diseased area. Suitably…

Emerging Technologies · Computer Science 2018-08-14 Mauro Femminella , Gianluca Reali , Athanasios V. Vasilakos