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Though exponentially growing health-related literature has been made available to a broad audience online, the language of scientific articles can be difficult for the general public to understand. Therefore, adapting this expert-level…

Computation and Language · Computer Science 2022-10-25 Kush Attal , Brian Ondov , Dina Demner-Fushman

We propose ParaSCI, the first large-scale paraphrase dataset in the scientific field, including 33,981 paraphrase pairs from ACL (ParaSCI-ACL) and 316,063 pairs from arXiv (ParaSCI-arXiv). Digging into characteristics and common patterns of…

Computation and Language · Computer Science 2021-02-08 Qingxiu Dong , Xiaojun Wan , Yue Cao

Peer review is a critical process for ensuring the integrity of published scientific research. Confidence in this process is predicated on the assumption that experts in the relevant domain give careful consideration to the merits of…

Computation and Language · Computer Science 2026-02-09 Sungduk Yu , Man Luo , Avinash Madasu , Vasudev Lal , Phillip Howard

Scientific figure interpretation is a crucial capability for AI-driven scientific assistants built on advanced Large Vision Language Models. However, current datasets and benchmarks primarily focus on simple charts or other relatively…

Objective: We aim to learn potential novel cures for diseases from unstructured text sources. More specifically, we seek to extract drug-disease pairs of potential cures to diseases by a simple reasoning over the structure of spoken text.…

Information Retrieval · Computer Science 2020-11-17 Rahul Yedida , Saad Mohammad Abrar , Cleber Melo-Filho , Eugene Muratov , Rada Chirkova , Alexander Tropsha

Text simplification aims to make the text easier to understand by applying rewriting transformations. There has been very little research on Chinese text simplification for a long time. The lack of generic evaluation data is an essential…

Computation and Language · Computer Science 2024-06-06 Ruining Chong , Luming Lu , Liner Yang , Jinran Nie , Zhenghao Liu , Shuo Wang , Shuhan Zhou , Yaoxin Li , Erhong Yang

We present a corpus of 5,000 richly annotated abstracts of medical articles describing clinical randomized controlled trials. Annotations include demarcations of text spans that describe the Patient population enrolled, the Interventions…

Computation and Language · Computer Science 2018-06-13 Benjamin Nye , Junyi Jessy Li , Roma Patel , Yinfei Yang , Iain J. Marshall , Ani Nenkova , Byron C. Wallace

Large Language Models (LLMs) have fundamentally transformed approaches to Natural Language Processing (NLP) tasks across diverse domains. In healthcare, accurate and cost-efficient text classification is crucial, whether for clinical notes…

Computation and Language · Computer Science 2026-02-16 Hajar Sakai , Sarah S. Lam

Researchers and scientists increasingly rely on specialized information retrieval (IR) or recommendation systems (RS) to support them in their daily research tasks. Paper recommender systems are one such tool scientists use to stay on top…

Information Retrieval · Computer Science 2022-05-12 Corinna Breitinger , Kay Herklotz , Tim Flegelskamp , Norman Meuschke

Text mining and information extraction for the medical domain has focused on scientific text generated by researchers. However, their direct access to individual patient experiences or patient-doctor interactions can be limited. Information…

Computation and Language · Computer Science 2022-04-22 Amelie Wührl , Roman Klinger

Current-generation Large Language Models (LLMs) have stirred enormous interest in recent months, yielding great potential for accessibility and automation, while simultaneously posing significant challenges and risk of misuse. To facilitate…

Computational methods have reshaped the landscape of modern biology. While the biomedical community is increasingly dependent on computational tools, the mechanisms ensuring open data, open software, and reproducibility are variably…

Other Quantitative Biology · Quantitative Biology 2020-07-28 Jaqueline J. Brito , Jun Li , Jason H. Moore , Casey S. Greene , Nicole A. Nogoy , Lana X. Garmire , Serghei Mangul

There has been rapid growth in biomedical literature, yet capturing the heterogeneity of the bibliographic information of these articles remains relatively understudied. Although graph mining research via heterogeneous graph neural networks…

Machine Learning · Computer Science 2023-08-28 Eric W Lee , Joyce C Ho

Identifying technological convergence among emerging technologies in cybersecurity is crucial for advancing science and fostering innovation. Unlike previous studies focusing on the binary relationship between a paper and the concept it…

Computers and Society · Computer Science 2024-03-05 Alessandro Tavazzi , Dimitri Percia David , Julian Jang-Jaccard , Alain Mermoud

Since the release of the original CheXpert paper five years ago, CheXpert has become one of the most widely used and cited clinical AI datasets. The emergence of vision language models has sparked an increase in demands for sharing reports…

Collections of research article data harvested from the web have become common recently since they are important resources for experimenting on tasks such as named entity recognition, text summarization, or keyword generation. In fact,…

Information Retrieval · Computer Science 2022-05-24 Erion Çano , Benjamin Roth

Electronic medical records (EMRs) are stored in relational databases. It can be challenging to access the required information if the user is unfamiliar with the database schema or general database fundamentals. Hence, researchers have…

Computation and Language · Computer Science 2023-03-24 Richard Tarbell , Kim-Kwang Raymond Choo , Glenn Dietrich , Anthony Rios

Wikipedia's contents are based on reliable and published sources. To this date, relatively little is known about what sources Wikipedia relies on, in part because extracting citations and identifying cited sources is challenging. To close…

Digital Libraries · Computer Science 2020-11-24 Harshdeep Singh , Robert West , Giovanni Colavizza

The scientific literature is growing exponentially, and professionals are no more able to cope with the current amount of publications. Text mining provided in the past methods to retrieve and extract information from text; however, most of…

Computation and Language · Computer Science 2019-02-27 Nikola Milosevic , Cassie Gregson , Robert Hernandez , Goran Nenadic

With advanced imaging, sequencing, and profiling technologies, multiple omics data become increasingly available and hold promises for many healthcare applications such as cancer diagnosis and treatment. Multimodal learning for integrative…

Genomics · Quantitative Biology 2022-12-20 Sina Tabakhi , Mohammod Naimul Islam Suvon , Pegah Ahadian , Haiping Lu