Related papers: PMC text mining subset in BioC: 2.3 million full t…
We report characteristics of in-text citations in over five million full text articles from two large databases - the PubMed Central Open Access subset and Elsevier journals - as functions of time, textual progression, and scientific field.…
We present a dataset of 833k paragraphs extracted from CC-BY licensed scientific publications, classified into four categories: acknowledgments, data mentions, software/code mentions, and clinical trial mentions. The paragraphs are…
In this paper, we analyse the current availability of open citations data in one particular dataset, namely COCI (the OpenCitations Index of Crossref open DOI-to-DOI citations; http://opencitations.net/index/coci) provided by OpenCitations.…
There has been a dramatic increase in the popularity of utilizing social media data for research purposes within the biomedical community. In PubMed alone, there have been nearly 2,500 publication entries since 2014 that deal with analyzing…
The workshop "Mining Scientific Papers: Computational Linguistics and Bibliometrics" (CLBib 2015), co-located with the 15th International Society of Scientometrics and Informetrics Conference (ISSI 2015), brought together researchers in…
The amount of scientific papers published every day is daunting and constantly increasing. Keeping up with literature represents a challenge. If one wants to start exploring new topics it is hard to have a big picture without reading lots…
Large-scale data sets on scholarly publications are the basis for a variety of bibliometric analyses and natural language processing (NLP) applications. Especially data sets derived from publication's full-text have recently gained…
Citation analysis is one of the most frequently used methods in research evaluation. We are seeing significant growth in citation analysis through bibliometric metadata, primarily due to the availability of citation databases such as the…
With high-throughput biotechnologies generating unprecedented quantities of data, researchers are faced with the challenge of locating and comparing an exponentially growing number of programs and websites dedicated to computational…
Bioinformatics workflows are essential for complex biological data analyses and are often described in scientific articles with source code in public repositories. Extracting detailed workflow information from articles can improve…
Writing a scientific article is a challenging task as it is a highly codified and specific genre, consequently proficiency in written communication is essential for effectively conveying research findings and ideas. In this article, we…
Automatic medical text simplification plays a key role in improving health literacy by making complex biomedical research accessible to diverse readers. However, most existing resources assume a single generic audience, overlooking the wide…
In biomedical vision-language modeling, datasets are typically mined from scientific literature, pairing compound figures with captions that are short, context-dependent, and oftern partially informative. Prior work on subfigure extraction…
A computational framework utilizes the traditional similarity measures for mining the significant relationships in biological annotations is recently proposed by Tatiana V. Karpinets et al. [2]. In this paper, an improved approximation…
As an important biomedical database, PubMed provides users with free access to abstracts of its documents. However, citations between these documents need to be collected from external data sources. Although previous studies have…
Topic pages aggregate useful information about an entity or concept into a single succinct and accessible article. Automated creation of topic pages would enable their rapid curation as information resources, providing an alternative to…
This paper presents the formal release of MedMentions, a new manually annotated resource for the recognition of biomedical concepts. What distinguishes MedMentions from other annotated biomedical corpora is its size (over 4,000 abstracts…
An emerging area of research in situated and multimodal interactive conversations (SIMMC) includes interactions in scientific papers. Since scientific papers are primarily composed of text, equations, figures, and tables, SIMMC methods must…
Text mining is becoming vital as Web 2.0 offers collaborative content creation and sharing. Now Researchers have growing interest in text mining methods for discovering knowledge. Text mining researchers come from variety of areas like:…
Bioinformatics web servers are critical resources in modern biomedical research, facilitating interactive exploration of datasets through custom-built interfaces with rich visualization capabilities. However, this human-centric design…