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Searching for all occurrences of a pattern in a text is a fundamental problem in computer science with applications in many other fields, like natural language processing, information retrieval and computational biology. In the last two…

Information Retrieval · Computer Science 2012-10-01 Simone Faro , M. Oguzhan Külekci

Approximate dictionary matching is a classic string matching problem (checking if a query string occurs in a collection of strings) with applications in, e.g., spellchecking, online catalogs, geolocation, and web searchers. We present a…

Data Structures and Algorithms · Computer Science 2016-02-15 Aleksander Cisłak , Szymon Grabowski

Suffix trees and suffix arrays are two of the most widely used data structures for text indexing. Each uses linear space and can be constructed in linear time for polynomially sized alphabets. However, when it comes to answering queries…

Data Structures and Algorithms · Computer Science 2013-11-08 Richard Cole , Tsvi Kopelowitz , Moshe Lewenstein

Given a string $S$ of $n$ integers in $[0,\sigma)$, a range minimum query RMQ$(i, j)$ asks for the index of the smallest integer in $S[i \dots j]$. It is well known that the problem can be solved with a succinct data structure of size $2n +…

Data Structures and Algorithms · Computer Science 2019-05-30 Paweł Gawrychowski , Seungbum Jo , Shay Mozes , Oren Weimann

The compressed indexing problem is to preprocess a string $S$ of length $n$ into a compressed representation that supports pattern matching queries. That is, given a string $P$ of length $m$ report all occurrences of $P$ in $S$. We present…

Data Structures and Algorithms · Computer Science 2018-04-12 Anders Roy Christiansen , Mikko Berggren Ettienne

String matching is the problem of finding all the substrings of a text which match a given pattern. It is one of the most investigated problems in computer science, mainly due to its very diverse applications in several fields. Recently,…

Data Structures and Algorithms · Computer Science 2017-07-04 Domenico Cantone , Simone Faro , Arianna Pavone

Many applications of approximate membership query data structures, or filters, require only an incremental filter that supports insertions but not deletions. However, the design space of incremental filters is missing a "sweet spot" filter…

Data Structures and Algorithms · Computer Science 2022-10-26 Tomer Even , Guy Even , Adam Morrison

We consider the problem of compactly representing the Depth First Search (DFS) tree of a given undirected or directed graph having $n$ vertices and $m$ edges while supporting various DFS related queries efficiently in the RAM with…

Data Structures and Algorithms · Computer Science 2019-06-20 Sankardeep Chakraborty , Kunihiko Sadakane

Sequence representations supporting not only direct access to their symbols, but also rank/select operations, are a fundamental building block in many compressed data structures. Several recent applications need to represent highly…

Data Structures and Algorithms · Computer Science 2019-11-25 Alberto Ordóñez , Gonzalo Navarro , Nieves R. Brisaboa

Sampling (evenly) the suffixes from the suffix array is an old idea trading the pattern search time for reduced index space. A few years ago Claude et al. showed an alphabet sampling scheme allowing for more efficient pattern searches…

Data Structures and Algorithms · Computer Science 2014-12-04 Szymon Grabowski , Marcin Raniszewski

Bit vectors with support for fast rank and select are a fundamental building block for compressed data structures. We close a gap between theory and practice by analyzing an important part of the design space and experimentally evaluating a…

Data Structures and Algorithms · Computer Science 2025-09-23 Florian Kurpicz , Niccolò Rigi-Luperti , Peter Sanders

We present a new efficient method for approximate search in electronic lexica. Given an input string (the pattern) and a similarity threshold, the algorithm retrieves all entries of the lexicon that are sufficiently similar to the pattern.…

Computation and Language · Computer Science 2015-12-04 Stefan Gerdjikov , Stoyan Mihov , Petar Mitankin , Klaus U. Schulz

The paper is concerned with the time efficient processing of spatiotemporal predicates, i.e. spatial predicates associated with an exact temporal constraint. A set of such predicates forms a buffer query or a Spatio-temporal Pattern (STP)…

Databases · Computer Science 2008-12-18 Lagogiannis George , Lorentzos Nikos , Sioutas Spyros , Theodoridis Evaggelos

Dual-encoder-based dense retrieval models have become the standard in IR. They employ large Transformer-based language models, which are notoriously inefficient in terms of resources and latency. We propose Fast-Forward indexes -- vector…

Information Retrieval · Computer Science 2023-11-03 Jurek Leonhardt , Henrik Müller , Koustav Rudra , Megha Khosla , Abhijit Anand , Avishek Anand

Runtime predictive analyses enhance coverage of traditional dynamic analyses based bug detection techniques by identifying a space of feasible reorderings of the observed execution and determining if any of these witnesses the violation of…

Programming Languages · Computer Science 2024-05-20 Zhendong Ang , Umang Mathur

Motivation: As a fundamental task in bioinformatics, searching for massive short patterns over a long text is widely accelerated by various compressed full-text indexes. These indexes are able to provide similar searching functionalities to…

Data Structures and Algorithms · Computer Science 2017-04-19 Haoyu Cheng , Ming Wu , Yun Xu

We develop faultless, fixed-depth, string-based, prefix and postfix symbolic regression grammars, capable of producing \emph{any} expression from a set of operands, unary operators and/or binary operators. Using these grammars, we outline…

Symbolic Computation · Computer Science 2024-10-11 Edward Finkelstein

This research concerns Learned Data Structures, a recent area that has emerged at the crossroad of Machine Learning and Classic Data Structures. It is methodologically important and with a high practical impact. We focus on Learned Indexes,…

Data Structures and Algorithms · Computer Science 2023-09-06 Domenico Amato , Giosué Lo Bosco , Raffaele Giancarlo

In a dynamic retrieval system, documents must be ingested as they arrive, and be immediately findable by queries. Our purpose in this paper is to describe an index structure and processing regime that accommodates that requirement for…

Information Retrieval · Computer Science 2023-01-12 Alistair Moffat , Joel Mackenzie

We propose a new linear-size data structure which provides a fast access to all palindromic substrings of a string or a set of strings. This structure inherits some ideas from the construction of both the suffix trie and suffix tree. Using…

Data Structures and Algorithms · Computer Science 2015-08-18 Mikhail Rubinchik , Arseny M. Shur