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Tandem duplication in DNA is the process of inserting a copy of a segment of DNA adjacent to the original position. Motivated by applications that store data in living organisms, Jain {\em et al.} (2016) proposed the study of codes that…

Combinatorics · Mathematics 2017-11-20 Yeow Meng Chee , Johan Chrisnata , Han Mao Kiah , Tuan Thanh Nguyen

We study the problem of reaching agreement in a synchronous distributed system by $n$ autonomous parties, when the communication links from/to faulty parties can omit messages. The faulty parties are selected and controlled by an adaptive,…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-05-27 Mohammad T. Hajiaghayi , Dariusz R. Kowalski , Jan Olkowski

We propose a class of subspace ascent methods for computing optimal approximate designs that covers both existing as well as new and more efficient algorithms. Within this class of methods, we construct a simple, randomized exchange…

Computation · Statistics 2018-01-18 Radoslav Harman , Lenka Filová , Peter Richtárik

Linear erasure codes with local repairability are desirable for distributed data storage systems. An [n, k, d] code having all-symbol (r, \delta})-locality, denoted as (r, {\delta})a, is considered optimal if it also meets the minimum…

Information Theory · Computer Science 2013-07-09 Wentu Song , Son Hoang Dau , Chau Yuen , Tiffany Jing Li

The deletion distance between two binary words $u,v \in \{0,1\}^n$ is the smallest $k$ such that $u$ and $v$ share a common subsequence of length $n-k$. A set $C$ of binary words of length $n$ is called a $k$-deletion code if every pair of…

Combinatorics · Mathematics 2023-10-19 Noga Alon , Gabriela Bourla , Ben Graham , Xiaoyu He , Noah Kravitz

Network decomposition is a central tool in distributed graph algorithms. We present two improvements on the state of the art for network decomposition, which thus lead to improvements in the (deterministic and randomized) complexity of…

Data Structures and Algorithms · Computer Science 2020-07-17 Mohsen Ghaffari , Christoph Grunau , Václav Rozhoň

We fully determine the communication complexity of approximating matrix rank, over any finite field $\mathbb{F}$. We study the most general version of this problem, where $0\leq r<R\leq n$ are given integers, Alice and Bob's inputs are…

Computational Complexity · Computer Science 2024-10-29 Alexander A. Sherstov , Andrey A. Storozhenko

This paper tackles two problems that fall under the study of coding for insertions and deletions. These problems are motivated by several applications, among them is reconstructing strands in DNA-based storage systems. Under this paradigm,…

Information Theory · Computer Science 2025-06-23 Omer Sabary , Daniella Bar-Lev , Yotam Gershon , Alexander Yucovich , Eitan Yaakobi

Symmetric submodular maximization is an important class of combinatorial optimization problems, including MAX-CUT on graphs and hyper-graphs. The state-of-the-art algorithm for the problem over general constraints has an approximation ratio…

Data Structures and Algorithms · Computer Science 2024-06-21 Zongqi Wan , Jialin Zhang , Xiaoming Sun , Zhijie Zhang

A permutation code is a nonlinear code whose codewords are permutation of a set of symbols. We consider the use of permutation code in the deletion channel, and consider the symbol-invariant error model, meaning that the values of the…

Information Theory · Computer Science 2024-11-14 Minhan Gao , Kenneth W. Shum

Consider two remote nodes having binary sequences $X$ and $Y$, respectively. $Y$ is an edited version of ${X}$, where the editing involves random deletions, insertions, and substitutions, possibly in bursts. The goal is for the node with…

Information Theory · Computer Science 2015-09-15 Ramji Venkataramanan , Vasuki Narasimha Swamy , Kannan Ramchandran

The $\Delta$-vertex coloring problem has become one of the prototypical problems for understanding the complexity of local distributed graph problems on constant-degree graphs. The major open problem is whether the problem can be solved…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-04-08 Manuel Jakob , Yannic Maus

This paper gives new results for synchronization strings, a powerful combinatorial object that allows to efficiently deal with insertions and deletions in various communication settings: $\bullet$ We give a deterministic, linear time…

Information Theory · Computer Science 2017-11-13 Bernhard Haeupler , Amirbehshad Shahrasbi

We provide the first deterministic distributed synchronizer with near-optimal time complexity and message complexity overheads. Concretely, given any distributed algorithm $\mathcal{A}$ that has time complexity $T$ and message complexity…

Data Structures and Algorithms · Computer Science 2023-05-12 Mohsen Ghaffari , Anton Trygub

A Maximum Distance Separable code over an alphabet $F$ is defined via an encoding function $C:F^k \rightarrow F^n$ that allows to retrieve a message $m \in F^k$ from the codeword $C(m)$ even after erasing any $n-k$ of its symbols. The…

Information Theory · Computer Science 2020-05-15 Mira Gonen , Ishay Haviv , Michael Langberg , Alex Sprintson

We study distributed algorithms for some fundamental problems in data summarization. Given a communication graph $G$ of $n$ nodes each of which may hold a value initially, we focus on computing $\sum_{i=1}^N g(f_i)$, where $f_i$ is the…

Data Structures and Algorithms · Computer Science 2019-08-07 Hsin-Hao Su , Hoa T. Vu

We introduce the concept of an \ff-maximal error-detecting block code, for some parameter \ff{} between 0 and 1, in order to formalize the situation where a block code is close to maximal with respect to being error-detecting. Our…

Information Theory · Computer Science 2016-08-01 Stavros Konstantinidis , Nelma Moreira , Rogerio Reis

A rateless code encodes a finite length information word into an infinitely long codeword such that longer prefixes of the codeword can tolerate a larger fraction of errors. A rateless code achieves capacity for a family of channels if, for…

Information Theory · Computer Science 2014-06-03 Benny Applebaum , Liron David , Guy Even

Pliable index coding considers a server with m messages, and n clients where each has as side information a subset of the messages. We seek to minimize the number of transmissions the server should make, so that each client receives (any)…

Information Theory · Computer Science 2016-01-22 Linqi Song , Christina Fragouli

We present the first optimal randomized algorithm for constructing the order-$k$ Voronoi diagram of $n$ points in two dimensions. The expected running time is $O(n\log n + nk)$, which improves the previous, two-decades-old result of Ramos…

Computational Geometry · Computer Science 2023-10-25 Timothy M. Chan , Pingan Cheng , Da Wei Zheng
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