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The graph matching problem is a significant special case of the Quadratic Assignment Problem, with extensive applications in pattern recognition, computer vision, protein alignments and related fields. As the problem is NP-hard, relaxation…

Optimization and Control · Mathematics 2025-04-01 Rongxuan Li

String matching algorithm plays the vital role in the Computational Biology. The functional and structural relationship of the biological sequence is determined by similarities on that sequence. For that, the researcher is supposed to aware…

Data Structures and Algorithms · Computer Science 2014-01-30 Pandiselvam. P , Marimuthu. T , Lawrance. R

Given a text and a pattern over two types of symbols called constants and variables, the parameterized pattern matching problem is to find all occurrences of substrings of the text that the pattern matches by substituting a variable in the…

Data Structures and Algorithms · Computer Science 2017-05-29 Yuki Igarashi , Diptarama , Ryo Yoshinaka , Ayumi Shinohara

The NP-complete Permutation Pattern Matching problem asks whether a permutation P (the pattern) can be matched into a permutation T (the text). A matching is an order-preserving embedding of P into T. In the Generalized Permutation Pattern…

Computational Complexity · Computer Science 2013-01-15 Marie-Louise Bruner , Martin Lackner

The problem of string reconstruction from substring information has found many applications due to its relevance in DNA- and polymer-based data storage. One practically important and challenging paradigm requires reconstructing mixtures of…

Information Theory · Computer Science 2020-10-22 Ryan Gabrys , Srilakshmi Pattabiraman , Olgica Milenkovic

How to identify, extract, and use phrasal knowledge is a crucial problem for the task of Recognizing Textual Entailment (RTE). To solve this problem, we propose a method for detecting paraphrases via natural deduction proofs of semantic…

Computation and Language · Computer Science 2018-04-23 Hitomi Yanaka , Koji Mineshima , Pascual Martinez-Gomez , Daisuke Bekki

We target the problem of provably computing the equivalence between two complex expression trees. To this end, we formalize the problem of equivalence between two such programs as finding a set of semantics-preserving rewrite rules from one…

Programming Languages · Computer Science 2021-06-10 Steve Kommrusch , Théo Barollet , Louis-Noël Pouchet

Words in some natural languages can have a composite structure. Elements of this structure include the root (that could also be composite), prefixes and suffixes with which various nuances and relations to other words can be expressed.…

Computation and Language · Computer Science 2017-09-05 Rustem Takhanov , Zhenisbek Assylbekov

Hinging on ideas from physical-layer network coding, some promising proposals of coded random access systems seek to improve system performance (while preserving low complexity) by means of packet repetitions and decoding of linear…

Information Theory · Computer Science 2018-05-30 Adriano Pastore , Paul de Kerret , Monica Navarro , David Gregoratti , David Gesbert

Regular expressions are a concise yet expressive language for expressing patterns. For instance, in networked software, they are used for input validation and intrusion detection. Yet some widely deployed regular expression matchers based…

Programming Languages · Computer Science 2013-01-08 James Kirrage , Asiri Rathnayake , Hayo Thielecke

Semantic parsing is the task of converting natural language utterances into machine interpretable meaning representations which can be executed against a real-world environment such as a database. Scaling semantic parsing to arbitrary…

Computation and Language · Computer Science 2018-12-27 Jianpeng Cheng , Siva Reddy , Mirella Lapata

Two strings are considered to have parameterized matching when there exists a bijection of the parameterized alphabet onto itself such that it transforms one string to another. Parameterized matching has application in software duplication…

Data Structures and Algorithms · Computer Science 2024-12-03 Apurba Saha , Iftekhar Hakim Kaowsar , Mahdi Hasnat Siyam , M. Sohel Rahman

We show a proof of principle for warping, a method to interpret the inner working of neural networks in the context of gene expression analysis. Warping is an efficient way to gain insight to the inner workings of neural nets and make them…

Genomics · Quantitative Biology 2017-08-17 Trofimov Assya , Lemieux Sebastien , Perreault Claude

We study the classical approximate string matching problem, that is, given strings $P$ and $Q$ and an error threshold $k$, find all ending positions of substrings of $Q$ whose edit distance to $P$ is at most $k$. Let $P$ and $Q$ have…

Data Structures and Algorithms · Computer Science 2011-03-21 Philip Bille

We present a novel parsing algorithm for all context-free languages, based on computing the relation between configurations and reaching transitions in a recursive transition network. Parsing complexity w.r.t. input length matches the state…

Formal Languages and Automata Theory · Computer Science 2019-02-19 Grzegorz Herman

Concurrent to the rapid progress in the development of neural-network based models in areas like natural language processing and computer vision, the need for creating explanations for the predictions of these black-box models has risen…

Computation and Language · Computer Science 2025-08-18 Marc Brinner , Sina Zarriess

Pattern matching with wildcards is the problem of finding all factors of a text $t$ of length $n$ that match a pattern $x$ of length $m$, where wildcards (characters that match everything) may be present. In this paper we present a number…

Data Structures and Algorithms · Computer Science 2016-01-15 Carl Barton

Grammar induction is the task of learning a grammar from a set of examples. Recently, neural networks have been shown to be powerful learning machines that can identify patterns in streams of data. In this work we investigate their…

Computation and Language · Computer Science 2018-06-27 Mor Cohen , Avi Caciularu , Idan Rejwan , Jonathan Berant

We approach the problem of linear network coding for multicast networks from different perspectives. We introduce the notion of the coding points of a network, which are edges of the network where messages combine and coding occurs. We give…

Information Theory · Computer Science 2024-02-07 Sarah E. Anderson , Wael Halbawi , Nathan Kaplan , Hiram H. López , Felice Manganiello , Emina Soljanin , Judy Walker

Cartesian tree matching is the problem of finding all substrings of a given text which have the same Cartesian trees as that of a given pattern. So far there is one linear-time solution for Cartesian tree matching, which is based on the KMP…

Data Structures and Algorithms · Computer Science 2019-08-15 Siwoo Song , Cheol Ryu , Simone Faro , Thierry Lecroq , Kunsoo Park
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