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The field of neuroscience is facing an unprecedented expanse in the volume and diversity of available data. Traditionally, network models have provided key insights into the structure and function of the brain. With the advent of big data…

Neurons and Cognition · Quantitative Biology 2018-02-14 Michael Vaiana , Sarah Muldoon

Understanding our brain is one of the most daunting tasks, one we cannot expect to complete without the use of technology. MindBigData aims to provide a comprehensive and updated dataset of brain signals related to a diverse set of human…

Signal Processing · Electrical Eng. & Systems 2023-01-02 David Vivancos , Felix Cuesta

The field of computational modeling of the brain is advancing so rapidly that now it is possible to model large scale networks representing different brain regions with a high level of biological detail in terms of numbers and synapses. For…

The explosion of data on the internet is a direct corollary of the social media platform. With petabytes of data being generated by end users, the researchers have access to unprecedented amount of data (Big Data). Such data provides an…

Computers and Society · Computer Science 2019-02-06 Adil E. Rajput , Samara M. Ahmed

Over the last ten years, developments in whole-brain microscopy now allow for high-resolution imaging of intact brains of small rodents such as mice. These complex images contain a wealth of information, but many neuroscience laboratories…

Neurons and Cognition · Quantitative Biology 2021-02-24 Adam L Tyson , Troy W Margrie

We present the Open Supernova Catalog, an online collection of observations and metadata for presently 36,000+ supernovae and related candidates. The catalog is freely available on the web (https://sne.space), with its main interface having…

Solar and Stellar Astrophysics · Physics 2017-01-25 James Guillochon , Jerod Parrent , Luke Zoltan Kelley , Raffaella Margutti

Multimodal neuroimaging grants a powerful in vivo window into the structure and function of the human brain. Recent methodological and conceptual advances have enabled investigations of the interplay between large-scale spatial trends, or…

In this paper we describe the design, and implementation of the Open Science Data Cloud, or OSDC. The goal of the OSDC is to provide petabyte-scale data cloud infrastructure and related services for scientists working with large quantities…

The goal of the Human Brain Project is to develop during the next decade an infrastructure necessary for running a simulation of the entire human brain constrained by current experimental data. One of the key issues is therefore to…

Quantitative Methods · Quantitative Biology 2017-06-23 Paul Tiesinga , Rembrandt Bakker , Sean Hill , Jan G. Bjaalie

The development of large-scale artificial intelligence (AI) models is influencing neuroscience research by enabling end-to-end learning from raw brain signals and neural data. In this paper, we review applications of large-scale AI models…

Astronomy produces extremely large data sets from ground-based telescopes, space missions, and simulation. The volume and complexity of these rich data sets require new approaches and advanced tools to understand the information contained…

Instrumentation and Methods for Astrophysics · Physics 2014-02-25 Demitri Muna , Eric Huff

Deep neural networks have become increasingly large and sparse, allowing for the storage of large-scale neural networks with decreased costs of storage and computation. Storage of a neural network with as many connections as the human brain…

Neural and Evolutionary Computing · Computer Science 2021-09-24 Morgan Schaefer , Lauren Michelin , Jeremy Kepner

This paper presents a comprehensive and quality collection of functional human brain network data for potential research in the intersection of neuroscience, machine learning, and graph analytics. Anatomical and functional MRI images have…

In an effort to overcome the data deluge in computational biology and bioinformatics and to facilitate bioinformatics research in the era of big data, we identify some of the most influential algorithms that have been widely used in the…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-10-03 Faraz Faghri , Sayed Hadi Hashemi , Mohammad Babaeizadeh , Mike A. Nalls , Saurabh Sinha , Roy H. Campbell

In the dawn of computer science and the eve of neuroscience we participate in rebirth of neuroscience due to new technology that allows us to deeply and precisely explore whole new world that dwells in our brains.

Artificial Intelligence · Computer Science 2014-03-25 Boris Tomas

Public data archives are the backbone of modern biological and biomedical research. While archives for biological molecules and structures are well-established, resources for imaging data do not yet cover the full range of spatial and…

Quantitative Methods · Quantitative Biology 2018-11-05 Jan Ellenberg , Jason R Swedlow , Mary Barlow , Charles E Cook , Ardan Patwardhan , Alvis Brazma , Ewan Birney

Two major initiatives to accelerate research in the brain sciences have focused attention on developing a new generation of scientific instruments for neuroscience. These instruments will be used to record static (structural) and dynamic…

Neurons and Cognition · Quantitative Biology 2013-07-30 Thomas Dean , Biafra Ahanonu , Mainak Chowdhury , Anjali Datta , Andre Esteva , Daniel Eth , Nobie Redmon , Oleg Rumyantsev , Ysis Tarter

We organized a workshop on the "Present and Future Frameworks of Theoretical Neuroscience", with the support of the National Science Foundation. The objective was to identify the challenges and strategies that this field will need to tackle…

Neurons and Cognition · Quantitative Biology 2020-04-06 Horacio G. Rotstein , Fidel Santamaria

The excessive amounts of data generated by devices and Internet-based sources at a regular basis constitute, big data. This data can be processed and analyzed to develop useful applications for specific domains. Several mathematical and…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-12-15 Samiya Khan , Kashish Ara Shakil , Mansaf Alam

The widespread development and adoption of open-source software have built an ecosystem for open development and collaboration. In this ecosystem, individuals and organizations collaborate to create high-quality software that can be used by…

Digital Libraries · Computer Science 2023-11-28 Xiaoya Xia , Shengyu Zhao , Fanyu Han , Fenglin Bi , Wei Wang