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We revisit the classical problem of exact inference on probabilistic graphical models (PGMs). Our algorithm is based on recent \emph{worst-case optimal database join} algorithms, which can be asymptotically faster than traditional data…

Artificial Intelligence · Computer Science 2018-07-04 Aarthy Shivram Arun , Sai Vikneshwar Mani Jayaraman , Christopher Ré , Atri Rudra

Considering the worst-case scenario, junction tree algorithm remains the most general solution for exact MAP inference with polynomial run-time guarantees. Unfortunately, its main tractability assumption requires the treewidth of a…

Discrete Mathematics · Computer Science 2022-02-10 Alexander Bauer , Shinichi Nakajima

Bayesian networks are popular probabilistic models that capture the conditional dependencies among a set of variables. Inference in Bayesian networks is a fundamental task for answering probabilistic queries over a subset of variables in…

Databases · Computer Science 2021-10-08 Martino Ciaperoni , Cigdem Aslay , Aristides Gionis , Michael Mathioudakis

Probabilistic inference over large data sets is a challenging data management problem since exact inference is generally #P-hard and is most often solved approximately with sampling-based methods today. This paper proposes an alternative…

Databases · Computer Science 2016-06-15 Wolfgang Gatterbauer , Dan Suciu

We present an exact Bayesian inference method for discrete statistical models, which can find exact solutions to a large class of discrete inference problems, even with infinite support and continuous priors. To express such models, we…

Programming Languages · Computer Science 2023-11-08 Fabian Zaiser , Andrzej S. Murawski , Luke Ong

Context graphs are essential for modern AI applications including question answering, pattern discovery, and data analysis. Building accurate context graphs from structured databases requires inferring join relationships between entities.…

Databases · Computer Science 2026-03-05 Shivani Tripathi , Ravi Shetye , Shi Qiao , Alekh Jindal

Probabilistic inference is a fundamental task in modern machine learning. Recent advances in tensor network (TN) contraction algorithms have enabled the development of better exact inference methods. However, many common inference tasks in…

Machine Learning · Computer Science 2024-09-10 Martin Roa-Villescas , Xuanzhao Gao , Sander Stuijk , Henk Corporaal , Jin-Guo Liu

Probabilistic graphical models (PGMs) are powerful tools for solving systems of complex relationships over a variety of probability distributions. However, while tree-structured PGMs always result in efficient and exact solutions, inference…

Machine Learning · Computer Science 2021-11-10 Simon Streicher , Johan du Preez

While deep learning has revolutionized the prediction of rigid protein structures, modelling the conformational ensembles of Intrinsically Disordered Proteins (IDPs) remains a key frontier. Current AI paradigms present a trade-off: Protein…

Biomolecules · Quantitative Biology 2025-12-19 Eoin Quinn , Marco Carobene , Jean Quentin , Sebastien Boyer , Miguel Arbesú , Oliver Bent

Motivation: Many inference tools use the Perfect Phylogeny Model (PPM) to learn trees from noisy variant allele frequency (VAF) data. Learning in this setting is hard, and existing tools use approximate or heuristic algorithms. An…

Quantitative Methods · Quantitative Biology 2019-08-26 Surjyendu Ray , Bei Jia , Sam Safavi , Tim van Opijnen , Ralph Isberg , Jason Rosch , José Bento

Minimisation of discrete energies defined over factors is an important problem in computer vision, and a vast number of MAP inference algorithms have been proposed. Different inference algorithms perform better on factor graph models (GMs)…

Computer Vision and Pattern Recognition · Computer Science 2016-08-10 Paul Henderson , Vittorio Ferrari

Universal probabilistic programming systems (PPSs) provide a powerful framework for specifying rich probabilistic models. They further attempt to automate the process of drawing inferences from these models, but doing this successfully is…

Machine Learning · Statistics 2020-07-17 Yuan Zhou , Hongseok Yang , Yee Whye Teh , Tom Rainforth

Probabilistic Inference Modulo Theories (PIMT) is a recent framework that expands exact inference on graphical models to use richer languages that include arithmetic, equalities, and inequalities on both integers and real numbers. In this…

Artificial Intelligence · Computer Science 2017-09-06 Rodrigo de Salvo Braz , Ciaran O'Reilly

Join order selection plays a significant role in query performance. However, modern query optimizers typically employ static join enumeration algorithms that do not receive any feedback about the quality of the resulting plan. Hence,…

Databases · Computer Science 2018-09-28 Ryan Marcus , Olga Papaemmanouil

Deep neural networks (DNNs) lack the precise semantics and definitive probabilistic interpretation of probabilistic graphical models (PGMs). In this paper, we propose an innovative solution by constructing infinite tree-structured PGMs that…

Machine Learning · Statistics 2025-03-25 Boyao Li , Alexander J. Thomson , Houssam Nassif , Matthew M. Engelhard , David Page

Probabilistic graphical models offer a powerful framework to account for the dependence structure between variables, which is represented as a graph. However, the dependence between variables may render inference tasks intractable. In this…

Relational Continuous Models (RCMs) represent joint probability densities over attributes of objects, when the attributes have continuous domains. With relational representations, they can model joint probability distributions over large…

Artificial Intelligence · Computer Science 2012-03-19 Jaesik Choi , Eyal Amir , David J. Hill

Automatically inferring join relationships is a critical task for effective data discovery, integration, querying and reuse. However, accurately and efficiently identifying these relationships in large and complex schemas can be…

We present a framework for efficient inference in structured image models that explicitly reason about objects. We achieve this by performing probabilistic inference using a recurrent neural network that attends to scene elements and…

Computer Vision and Pattern Recognition · Computer Science 2016-08-15 S. M. Ali Eslami , Nicolas Heess , Theophane Weber , Yuval Tassa , David Szepesvari , Koray Kavukcuoglu , Geoffrey E. Hinton

Deep learning models are defined in terms of a large number of hyperparameters, such as network architectures and optimiser settings. These hyperparameters must be determined separately from the model parameters such as network weights, and…

High Energy Physics - Phenomenology · Physics 2024-10-22 Juan Cruz-Martinez , Aaron Jansen , Gijs van Oord , Tanjona R. Rabemananjara , Carlos M. R. Rocha , Juan Rojo , Roy Stegeman
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