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In this paper we derive a compact mathematical formulation describing the dynamics of chemical reaction networks that are complex-balanced and are governed by mass action kinetics. The formulation is based on the graph of (substrate and…

Dynamical Systems · Mathematics 2012-12-12 Shodhan Rao , Arjan van der Schaft , Bayu Jayawardhana

We study two different types of gluing for graphs: interface (obtained by choosing a common subgraph as the gluing component) and bridge gluing (obtained by adding a set of edges to the given subgraphs). We introduce formulae for computing…

Mathematical Physics · Physics 2018-05-07 Ivan Contreras , Michael Toriyama , Chengzheng Yu

Recent applications of large network models to machine learning, and to neural network suggest a need for a systematic study of the general correspondence, (i) discrete vs (ii) continuous. Even if the starting point is (i), limit…

Functional Analysis · Mathematics 2019-03-25 Sergey Bezuglyi , Palle E. T. Jorgensen

We study the existence of a common hypercyclic vector for different families of composition operators.

Functional Analysis · Mathematics 2007-05-23 Frederic Bayart

Several new spectral properties of the normalized Laplacian defined for oriented hypergraphs are shown. The eigenvalue $1$ and the case of duplicate vertices are discussed; two Courant nodal domain theorems are established; new quantities…

Combinatorics · Mathematics 2021-03-23 Raffaella Mulas , Dong Zhang

This paper considers the comparison between the eigenvalues of Laplace operators with the standard conditions and the anti-standard conditions on non-bipartite graphs which are equilateral or inequilateral. First of all, we show the…

Spectral Theory · Mathematics 2021-02-23 Hongjun Wang , Hongmei Song , Jia Zhao

In this paper we introduce a new representation for the multistationarity region of a reaction network, using polynomial superlevel sets. The advantages of using this polynomial superlevel set representation over the already existing…

Molecular Networks · Quantitative Biology 2022-09-29 AmirHosein Sadeghimanesh , Matthew England

Spectral graph convolutional networks are generalizations of standard convolutional networks for graph-structured data using the Laplacian operator. A common misconception is the instability of spectral filters, i.e. the impossibility to…

Machine Learning · Computer Science 2020-12-21 Axel Nilsson , Xavier Bresson

For the investigation of chemical reaction networks, the identification of all relevant intermediates and elementary reactions is mandatory. Many algorithmic approaches exist that perform explorations efficiently and automatedly. These…

Chemical Physics · Physics 2019-05-24 Gregor N. Simm , Alain C. Vaucher , Markus Reiher

Lattice structures play a central role in spectral graph theory, offering analytical insight into diffusion, synchronization, and transport processes on regular discrete spaces. While their spectral properties are completely characterized…

Combinatorics · Mathematics 2025-11-17 Eleonora Andreotti

In the study of dynamical systems on networks/graphs, a key theme is how the network topology influences stability for steady states or synchronized states. Ideally, one would like to derive conditions for stability or instability that…

Dynamical Systems · Mathematics 2020-07-01 Raffaella Mulas , Christian Kuehn , Jürgen Jost

Many neural networks for graphs are based on the graph convolution operator, proposed more than a decade ago. Since then, many alternative definitions have been proposed, that tend to add complexity (and non-linearity) to the model. In this…

Machine Learning · Computer Science 2021-06-11 Luca Pasa , Nicolò Navarin , Wolfgang Erb , Alessandro Sperduti

We consider a generalization of the diffusion equation on graphs. This generalized diffusion equation gives rise to both normal and superdiffusive processes on infinite one-dimensional graphs. The generalization is based on the $k$-path…

Functional Analysis · Mathematics 2017-03-30 Ernesto Estrada , Ehsan Hameed , Naomichi Hatano , Matthias Langer

We study Laplace-type operators on hybrid manifolds, i.e. on configurations consisting of closed two-dimensional manifolds and one-dimensional segments. Such an operator can be constructed by using the Laplace-Beltrami operators on each…

Mathematical Physics · Physics 2011-06-13 Konstantin Pankrashkin , Svetlana Roganova , Nader Yeganefar

The main objective of the present work is to study the negative spectrum of (differential) Laplace operators on metric graphs as well as their resolvents and associated heat semigroups. We prove an upper bound on the number of negative…

Mathematical Physics · Physics 2007-05-23 Vadim Kostrykin , Robert Schrader

Many variants of join operations of graphs have been introduced and their spectral properties have been studied extensively by many researchers. This paper mainly focuses on the Laplacian spectra of some double join operations of graphs. We…

Combinatorics · Mathematics 2017-05-04 Gui-Xian Tian , Jing-Xiang He , Shu-Yu Cui

In this paper, we introduce three operations on hypergraphs by using tensors. We show that these three formulations are equivalent and we commonly call them as the tensor join. We show that any hypergraph can be viewed as a tensor join of…

Combinatorics · Mathematics 2023-06-01 R. Vishnupriya , R. Rajkumar

Notions of interpolating variational splines and Paley-Wiener spaces are introduced on a combinatorial graph G. Both of these definitions explore existence of a combinatorial Laplace operator onG. The existence and uniqueness of…

Information Theory · Computer Science 2011-11-28 Isaac Pesenson

In this study, we explore the interrelation between hypergraph symmetries represented by equivalence relations on the vertex set and the spectra of operators associated with the hypergraph. We introduce the idea of equivalence relation…

Combinatorics · Mathematics 2024-10-25 Anirban Banerjee , Samiron Parui

Motivated by recent progress on the interplay between graph theory, dynamics, and systems theory, we revisit the analysis of chemical reaction networks described by mass action kinetics. For reaction networks possessing a thermodynamic…

Optimization and Control · Mathematics 2012-06-19 Arjan van der Schaft , Shodhan Rao , Bayu Jayawardhana