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We describe a compression-based distance for genomic sequences. Instead of using the usual conjoint information content, as in the classical Normalized Compression Distance (NCD), it uses the conditional information content. To compute this…

Genomics · Quantitative Biology 2014-01-21 Diogo Pratas , Armando J. Pinho

Kolmogorov complexity has inspired several alignment-free distance measures, based on the comparison of lengths of compressions, which have been applied successfully in many areas. One of these measures, the so-called Universal Similarity…

Quantitative Methods · Quantitative Biology 2011-11-10 Jairo Rocha , Francesc Rosselló , Joan Segura

The traditional methods for data compression are typically based on the symbol-level statistics, with the information source modeled as a long sequence of i.i.d. random variables or a stochastic process, thus establishing the fundamental…

Computation and Language · Computer Science 2023-04-04 Mingxiao Li , Rui Jin , Liyao Xiang , Kaiming Shen , Shuguang Cui

Recently, surface electromyogram (EMG) has been proposed as a novel biometric trait for addressing some key limitations of current biometrics, such as spoofing and liveness. The EMG signals possess a unique characteristic: they are…

Cryptography and Security · Computer Science 2022-12-02 Ashirbad Pradhan , Jiayuan He , Ning Jiang

In order to deal with the scaling problem of volumetric map representations we propose spatially local methods for high-ratio compression of 3D maps, represented as truncated signed distance fields. We show that these compressed maps can be…

Storage systems often rely on multiple copies of the same compressed data, enabling recovery in case of binary data errors, of course, at the expense of a higher storage cost. In this paper we show that a wiser method of duplication entails…

Multimedia · Computer Science 2019-02-08 Yehuda Dar , Alfred M. Bruckstein

Biometric recognition has primarily addressed closed-set identification, assuming all probe subjects are in the gallery. However, most practical applications involve open-set biometrics, where probe subjects may or may not be present in the…

Computer Vision and Pattern Recognition · Computer Science 2025-08-08 Yiyang Su , Minchul Kim , Feng Liu , Anil Jain , Xiaoming Liu

In retrieval applications, binary hashes are known to offer significant improvements in terms of both memory and speed. We investigate the compression of sentence embeddings using a neural encoder-decoder architecture, which is trained by…

Information Retrieval · Computer Science 2019-08-16 Felix Hamann , Nadja Kurz , Adrian Ulges

Modern image and video compression codes employ elaborate structures existing in such signals to encode them into few number of bits. Compressed sensing recovery algorithms on the other hand use such signals' structures to recover them from…

Information Theory · Computer Science 2017-04-10 Sajjad Beygi , Shirin Jalali , Arian Maleki , Urbashi Mitra

This work proposes and analyzes a compressed sensing approach to polynomial approximation of complex-valued functions in high dimensions. Of particular interest is the setting where the target function is smooth, characterized by a rapidly…

Numerical Analysis · Mathematics 2020-01-22 Abdellah Chkifa , Nick Dexter , Hoang Tran , Clayton G. Webster

In this work, we conceptualize the learning process as information compression. We seek to equip generative pre-trained models with human-like learning capabilities that enable data compression during inference. We present a novel approach…

Artificial Intelligence · Computer Science 2023-08-15 Cynthia Huang , Yuqing Xie , Zhiying Jiang , Jimmy Lin , Ming Li

Volumetric data compression is critical in fields like medical imaging, scientific simulation, and entertainment. We introduce a structure-free neural compression method combining Fourierfeature encoding with selective voxel sampling,…

Computer Vision and Pattern Recognition · Computer Science 2025-08-13 Leona Žůrková , Petr Strakoš , Michal Kravčenko , Tomáš Brzobohatý , Lubomír Říha

Feature compression, as an important branch of video coding for machines (VCM), has attracted significant attention and exploration. However, the existing methods mainly focus on intra-feature similarity, such as the Mean Squared Error…

Computer Vision and Pattern Recognition · Computer Science 2024-05-08 Changsheng Gao , Yiheng Jiang , Li Li , Dong Liu , Feng Wu

Biometric Authentication has become a very popular method for different state-of-the-art security architectures. Albeit the ubiquitous acceptance and constant development of trivial biometric authentication methods such as fingerprint,…

Cryptography and Security · Computer Science 2018-05-17 Nafis Neehal , Dewan Ziaul Karim , Sejuti Banik , Tasfia Anika

In this paper, we propose an effective electrocardiogram (ECG) arrhythmia classification method using a deep two-dimensional convolutional neural network (CNN) which recently shows outstanding performance in the field of pattern…

Computer Vision and Pattern Recognition · Computer Science 2018-04-19 Tae Joon Jun , Hoang Minh Nguyen , Daeyoun Kang , Dohyeun Kim , Daeyoung Kim , Young-Hak Kim

Aim/background: Continuous glucose monitoring (CGM) generates dense time-series data, posing challenges for efficient storage, transmission, and analysis. This study evaluates novel encoding strategies that reduce CGM profiles to a compact…

Quantitative Methods · Quantitative Biology 2026-01-05 Clara Bender , Line Davidsen , Søren Schou Olesen , Simon Lebech Cichosz

The generation of voluminous scientific data poses significant challenges for efficient storage, transfer, and analysis. Recently, error-bounded lossy compression methods emerged due to their ability to achieve high compression ratios while…

Machine Learning · Computer Science 2025-05-13 Guozhong Li , Muhannad Alhumaidi , Spiros Skiadopoulos , Ibrahim Hoteit , Panos Kalnis

In this paper, we propose a privacy-preserving image classification method that uses encrypted images and an isotropic network such as the vision transformer. The proposed method allows us not only to apply images without visual information…

Computer Vision and Pattern Recognition · Computer Science 2022-04-19 AprilPyone MaungMaung , Hitoshi Kiya

Sampling is a fundamental aspect of any implementation of compressive sensing. Typically, the choice of sampling method is guided by the reconstruction basis. However, this approach can be problematic with respect to certain hardware…

Signal Processing · Electrical Eng. & Systems 2019-06-24 Elin Farnell , Henry Kvinge , John P. Dixon , Julia R. Dupuis , Michael Kirby , Chris Peterson , Elizabeth C. Schundler , Christian W. Smith

The classification of electrocardiogram (ECG) plays a crucial role in the development of an automatic cardiovascular diagnostic system. However, considerable variances in ECG signals between individuals is a significant challenge. Changes…

Signal Processing · Electrical Eng. & Systems 2023-06-08 Md Niaz Imtiaz , Naimul Khan