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We present efficient algorithms for computing a maximum agreement forest (MAF) of a pair of multifurcating (nonbinary) rooted trees. Our algorithms match the running times of the currently best algorithms for the binary case. The size of an…
Just how many different connected shapes result from slicing a cube along some of its edges and unfolding it into the plane? In this article we answer this question by viewing the cube both as a surface and as a graph of vertices and edges.…
Trees without vertices of degree $2$ are sometimes named topological trees. In this work, we bring forward the study of the inducibility of (rooted) topological trees with a given number of leaves. The inducibility of a topological tree $S$…
We consider the enumeration of tropical curves in M\"obius strips for two different lattice structures and relate them to the enumeration of curves in two rational ruled surfaces over a complex elliptic curve. Using this correspondence, we…
We define a `tree of fusion systems' and give a sufficient condition for its completion to be saturated. We apply this result to enlarge an arbitrary fusion system by extending the automorphism groups of certain of its subgroups.
This article focuses on properties and structures of trees with maximum mean subtree order in a given family; such trees are called optimal in the family. Our main goal is to describe the structure of optimal trees in $\mathcal{T}_n$ and…
Sum-Product Networks with complex probability distribution at the leaves have been shown to be powerful tractable-inference probabilistic models. However, while learning the internal parameters has been amply studied, learning complex leaf…
Invariants for complicated objects such as those arising in phylogenetics, whether they are invariants as matrices, polynomials, or other mathematical structures, are important tools for distinguishing and working with such objects. In this…
We consider three bivariate polynomial invariants $P$, $A$, and $S$ for rooted trees, as well as a trivariate polynomial invariant $M$. These invariants are motivated by random destruction processes such as the random cutting model or site…
Let $X$ be a finite set. We give criterion to say if a system of trees ${\cal P}=\{T_i\}_i$ with leaf sets $L(T_i) \in {X \choose 5}$ can be amalgamated into a supertree, that is, if there exists a tree $T$ with $L(T)=X$ such that $T$…
We present a purely combinatorial solution of the problem of enumerating planar bicubic maps with hard particles. This is done by use of a bijection with a particular class of blossom trees with particles, obtained by an appropriate cutting…
A number of hook formulas and hook summation formulas have previously appeared, involving various classes of trees. One of these classes of trees is rooted trees with labelled vertices, in which the labels increase along every chain from…
We study the crossing-minimization problem in a layered graph drawing of planar-embedded rooted trees whose leaves have a given total order on the first layer, which adheres to the embedding of each individual tree. The task is then to…
There are several common ways to encode a tree as a matrix, such as the adjacency matrix, the Laplacian matrix (that is, the infinitesimal generator of the natural random walk), and the matrix of pairwise distances between leaves. Such…
We study the problem of deciding whether some PSPACE-complete problems have models of bounded size. Contrary to problems in NP, models of PSPACE-complete problems may be exponentially large. However, such models may take polynomial space in…
Phylogenetic trees canonically arise as embeddings of phylogenetic networks. We recently showed that the problem of deciding if two phylogenetic networks embed the same sets of phylogenetic trees is computationally hard, \blue{in…
We prove that every tree of maximum degree $\Delta$ with $\ell$ leaves contains paths between leaves of at least $\log_{\Delta-1}((\Delta-2)\ell)$ distinct lengths. This settles in a strong form a conjecture of Narins, Pokrovskiy and…
Phylogenetic trees are binary nonplanar trees with labelled leaves, and plane oriented recursive trees are planar trees with an increasing labelling. Both families are enumerated by double factorials. A bijection is constructed, using the…
Treemaps are a popular technique to visualize hierarchical data. The input is a weighted tree $\tree$ where the weight of each node is the sum of the weights of its children. A treemap for $\tree$ is a hierarchical partition of a rectangle…
All factorizable Lie bialgebra structures on complex reductive Lie algebras were described by Belavin and Drinfeld. We classify the symplectic leaves of the full class of corresponding connected Poisson-Lie groups. A formula for their…