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The Rooted Maximum Leaf Outbranching problem consists in finding a spanning directed tree rooted at some prescribed vertex of a digraph with the maximum number of leaves. Its parameterized version asks if there exists such a tree with at…
We study the extreme local structure of plane binary trees through the distribution of leaves at maximum depth. We first address two basic questions: (i) the asymptotic probability that exactly two leaves occur at the deepest level, and…
We introduce a notion of finite sampling consistency for phylogenetic trees and show that the set of finitely sampling consistent and exchangeable distributions on n leaf phylogenetic trees is a polytope. We use this polytope to show that…
Let $L(G)$ denote the maximum number of leaves in any spanning tree of a connected graph $G$. We show the (known) result that for the $n$-cube $Q_n$, $L(Q_n) \sim 2^n = |V(Q_n)|$ as $n\rightarrow \infty$. Examining this more carefully,…
Phylogenetic tree shapes capture fundamental signatures of evolution. We consider ``ranked'' tree shapes, which are equipped with a total order on the internal nodes compatible with the tree graph. Recent work has established an elegant…
Tree-like tableaux are combinatorial objects that appear in a combinatorial understanding of the PASEP model from statistical mechanics. In this understanding, the corners of the Southeast border correspond to the locations where a particle…
A chief problem in phylogenetics and database theory is the computation of a maximum consistent tree from a set of rooted or unrooted trees. A standard input are triplets, rooted binary trees on three leaves, or quartets, unrooted binary…
Branched polymers can be classified into two categories that obey the different formulae: \begin{equation} \nu= \begin{cases} \hspace{1mm}\displaystyle\frac{2(1+\nu_{0})}{d+2} & \hspace{3mm}\mbox{for polymers…
Tree sets are abstract structures that can be used to model various tree-shaped objects in combinatorics. Finite tree sets can be represented by finite graph-theoretical trees. We extend this representation theory to infinite tree sets.…
A closed-form formula is derived for the number of occurrences of matches of a multiset of patterns among all ordered (plane-planted) trees with a given number of edges. A pattern looks like a tree, with internal nodes and leaves, but also…
We consider the counting problem of the number of \textit{leaf-labeled increasing trees}, where internal nodes may have an arbitrary number of descendants. The set of all such trees is a discrete representation of the genealogies obtained…
We give closed form expressions for the numbers of multi-rooted plane trees with specified degrees of root vertices. This results in an infinite number of integer sequences some of which are known to have an alternative interpretation. We…
The recursive and hierarchical structure of full rooted trees is applicable to represent statistical models in various areas, such as data compression, image processing, and machine learning. In most of these cases, the full rooted tree is…
A graph $H^{\prime}$ is $(H, G)$-saturated if it is $G$-free and the addition of any edge of $H$ not in $H^{\prime}$ creates a copy of $G$. The saturation number $sat(H, G)$ is the minimum number of edges in a $(H, G)$-saturated graph. We…
We study the problem of folding a polyomino $P$ into a polycube $Q$, allowing faces of $Q$ to be covered multiple times. First, we define a variety of folding models according to whether the folds (a) must be along grid lines of $P$ or can…
We study functional graphs generated by several quadratic polynomials, acting simultaneously on a finite field of odd characteristic. We obtain several results about the number of leaves in such graphs. In particular, in the case of graphs…
Weighted recursive trees are built by adding successively vertices with predetermined weights to a tree: each new vertex is attached to a parent chosen at random with probability proportional to its weight. In the case where the total…
We consider the problem of finding a spanning tree with maximum number of leaves (MaxLeaf). A 2-approximation algorithm is known for this problem, and a 3/2-approximation algorithm when restricted to graphs where every vertex has degree 3…
The basin of infinity of a polynomial map $f : {\bf C} \arrow {\bf C}$ carries a natural foliation and a flat metric with singularities, making it into a metrized Riemann surface $X(f)$. As $f$ diverges in the moduli space of polynomials,…
Combinatorics of biopolymer structures, especially enumeration of various RNA secondary structures and protein contact maps, is of significant interest for communities of both combinatorics and computational biology. However, most of the…