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An evolutionary tree is a cascade of bifurcations starting from a single common root, generating a growing set of daughter species as time goes by. Species here is a general denomination for biological species, spoken languages or any other…

Quantitative Methods · Quantitative Biology 2013-08-26 Paulo Murilo Castro de Oliveira

The relationship between the physical characteristics of the radiation field and biological damage is central to both radiotherapy and radioprotection, yet the link between spatial scales of energy deposition and biological effects remains…

Conventional deep learning (DL) model compression and scaling methods focus on altering the model's components, impacting the results across all samples uniformly. However, since samples vary in difficulty, a dynamic model that adapts…

Machine Learning · Computer Science 2025-05-09 Qingyuan Wang , Barry Cardiff , Antoine Frappé , Benoit Larras , Deepu John

We investigate a set of design principles that link specific features of interparticle interactions to predictable structural and dynamic outcomes in two-dimensional self-assembly, a framework relevant to soft matter and biological…

Soft Condensed Matter · Physics 2026-01-06 Cecilia Bores , Antonio Diaz-Pozuelo , Enrique Lomba

Discrete Choice Experiments (DCEs) are widely used to elicit preferences for products or services by analyzing choices among alternatives described by their attributes. The quality of the insights obtained from a DCE heavily depends on the…

Econometrics · Economics 2026-03-23 Daniel Pérez-Troncoso

Evolution and development operate at different timescales; generations for the one, a lifetime for the other. These two processes, the basis of much of life on earth, interact in many non-trivial ways, but their temporal hierarchy --…

Neural and Evolutionary Computing · Computer Science 2022-01-20 Fabien C. Y. Benureau , Jun Tani

Emergent behavior in active systems is a complex byproduct of local, often pairwise, interactions. One such interaction is self-avoidance, which experimentally can arise as a response to self-generated environmental signals; such…

Soft Condensed Matter · Physics 2024-03-29 Katherine Daftari , Katherine Newhall

We introduce a novel entropy-related function, \textit{non-repeatability}, designed to capture dynamical behaviors in complex systems. Its normalized form, \textit{mutability}, has been previously applied in statistical physics as a…

Statistical Mechanics · Physics 2025-04-04 Eugenio E. Vogel , Francisco J. Peña , G. Saravia , P. Vargas

Electronic density of states (DOS) is a key factor in condensed matter physics and material science that determines the properties of metals. First-principles density-functional theory (DFT) calculations have typically been used to obtain…

Materials Science · Physics 2019-04-12 Byung Chul Yeo , Donghun Kim , Chansoo Kim , Sang Soo Han

The oscillations observed in many time series, particularly in biomedicine, exhibit morphological variations over time. These morphological variations are caused by intrinsic or extrinsic changes to the state of the generating system,…

Applications · Statistics 2021-03-30 Yu-Ting Lin , John Malik , Hau-Tieng Wu

In this paper, we first propose a new extended mixture model of residual lifetime distributions. We show that this model is suitable in modeling residual lifetime in some practical situations. Several closure properties of some well-known…

Methodology · Statistics 2014-12-31 M. Kayid , S. Izadkhah

Self-organization creates new order and shifts sub-boundaries while reorganizing energy and entropy within a control volume. This article examines pathway selection and tests whether maximizing the entropy generation rate can forecast…

Materials Science · Physics 2026-03-10 J. A. Sekhar

Search for possible relationships between phylogeny and ontogeny is one of the most important issues in the field of evolutionary developmental biology. By representing developmental dynamics of spatially located cells with gene expression…

Populations and Evolution · Quantitative Biology 2015-04-01 Takahiro Kohsokabe , Kunihiko Kaneko

We investigate the discrete time crystal (DTC) phase in a qubit ensemble, periodically driven by its interaction with either a photon or a transmon field, which is prone to dissipative leakage. We find this DTC to be robust against changes…

Quantum Physics · Physics 2024-07-09 Tanaya Ray , Shuva Mondal , Ujjwal Sen

This study introduces a compositional autoencoder (CAE) framework designed to disentangle the complex interplay between genotypic and environmental factors in high-dimensional phenotype data to improve trait prediction in plant breeding and…

Deep learning techniques have shown promise in many domain applications. This paper proposes a novel deep reservoir computing framework, termed deep recurrent stochastic configuration network (DeepRSCN) for modelling nonlinear dynamic…

Machine Learning · Computer Science 2024-10-29 Gang Dang , Dianhui Wang

The importance of accurate simulation of the plastic deformation of ductile metals to the design of structures and components is well-known. Many techniques exist that address the length scales relevant to deformation pro- cesses, including…

Materials Science · Physics 2016-08-16 Reese Jones , Jonathan Zimmerman , Giacomo Po

Determining the stability of chemical compounds is essential for advancing material discovery. In this study, we introduce a novel deep neural network model designed to predict a crystal's formation energy, which identifies its stability…

Materials Science · Physics 2026-04-21 V. Torlao , E. A. Fajardo

Auto-Encoder based deep subspace clustering (DSC) is widely used in computer vision, motion segmentation and image processing. However, it suffers from the following three issues in the self-expressive matrix learning process: the first one…

Computer Vision and Pattern Recognition · Computer Science 2022-06-13 Guangyi Zhao , Simin Kou , Xuesong Yin

Common envelope (CE) evolution is largely governed by the drag torque applied on the in-spiralling stellar components by the envelope. Previous work has shown that idealized models of the torque based on a single body moving in rectilinear…

Solar and Stellar Astrophysics · Physics 2026-01-21 Soumik Bhattacharyya , Luke Chamandy , Eric G. Blackman , Adam Frank , Baowei Liu