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Mathematical formulas serve as a language through which humans communicate with nature. Discovering mathematical laws from scientific data to describe natural phenomena has been a long-standing pursuit of humanity for centuries. In the…

Artificial Intelligence · Computer Science 2026-05-14 Yanjie Li , Liping Zhang , Min Wu , Weijun Li , Lina Yu , Jingyi Liu , Yusong Deng , Mingzhu Wan , Xin Ning

The classical simulation of quantum computers is in general a computationally hard problem. To emulate the behavior of realistic devices, it is sufficient to sample bitstrings from circuits. Recently, arXiv:2112.08499 introduced the…

Quantum Physics · Physics 2023-11-21 Alex Shapiro , Ryan LaRose

Graph Neural Networks (GNNs) have recently shown to be powerful tools for representing and analyzing graph data. So far GNNs is becoming an increasingly critical role in software engineering including program analysis, type inference, and…

Artificial Intelligence · Computer Science 2021-02-17 Jintang Li , Kun Xu , Liang Chen , Zibin Zheng , Xiao Liu

It is intuitive that NLP tasks for logographic languages like Chinese should benefit from the use of the glyph information in those languages. However, due to the lack of rich pictographic evidence in glyphs and the weak generalization…

Computation and Language · Computer Science 2020-05-22 Yuxian Meng , Wei Wu , Fei Wang , Xiaoya Li , Ping Nie , Fan Yin , Muyu Li , Qinghong Han , Xiaofei Sun , Jiwei Li

We present scg-cli, a~command line tool facilitating software comprehension. The tool extracts semantic information about code structure and dependencies from the Java and Scala projects, and structures it as a~Semantic Code Graph (SCG), an…

Software Engineering · Computer Science 2023-10-06 Krzysztof Borowski , Bartosz Baliś

Despite being the most popular programming language, Python has not yet received enough attention from the community. To the best of our knowledge, there is no general static analysis framework proposed to facilitate the implementation of…

Software Engineering · Computer Science 2022-02-25 Li Li , Jiawei Wang , Haowei Quan

Processing high-throughput DNA sequencing data of individuals or populations requires stringing together independent software tools with many parameters, often leading to non-reproducible pipelines and datasets. We developed grenepipe to…

Genomics · Quantitative Biology 2025-01-09 Lucas Czech , Moises Exposito-Alonso

Call graphs play an important role in different contexts, such as profiling and vulnerability propagation analysis. Generating call graphs in an efficient manner can be a challenging task when it comes to high-level languages that are…

Programming Languages · Computer Science 2021-03-02 Vitalis Salis , Thodoris Sotiropoulos , Panos Louridas , Diomidis Spinellis , Dimitris Mitropoulos

Program slicing is a technique for simplifying programs by focusing on selected aspects of their behaviour. Current mainstream static slicing methods operate on the PDG (program dependence graph) or SDG (system dependence graph), but these…

Programming Languages · Computer Science 2019-03-14 Yingzhou Zhang

Genetic programming (GP) is a commonly used approach to solve symbolic regression (SR) problems. Compared with the machine learning or deep learning methods that depend on the pre-defined model and the training dataset for solving SR…

Neural and Evolutionary Computing · Computer Science 2022-05-23 Baihe He , Qiang Lu , Qingyun Yang , Jake Luo , Zhiguang Wang

anesthetic is a Python package for processing nested sampling runs, and will be useful for any scientist or statistician who uses nested sampling software. anesthetic unifies many existing tools and techniques in an extensible framework…

Instrumentation and Methods for Astrophysics · Physics 2019-05-14 Will Handley

We introduce Geomstats, an open-source Python toolbox for computations and statistics on nonlinear manifolds, such as hyperbolic spaces, spaces of symmetric positive definite matrices, Lie groups of transformations, and many more. We…

Any cutting-edge scientific research project requires a myriad of computational tools for data generation, management, analysis and visualization. Python is a flexible and extensible scientific programming platform that offered the perfect…

Quantitative Methods · Quantitative Biology 2008-03-14 Julius B. Lucks

Gaussian Processes (GPs) are widely used tools in statistics, machine learning, robotics, computer vision, and scientific computation. However, despite their popularity, they can be difficult to apply; all but the simplest classification or…

Machine Learning · Computer Science 2016-01-06 Ulrich Schaechtle , Ben Zinberg , Alexey Radul , Kostas Stathis , Vikash K. Mansinghka

Graphs are a powerful tool for representing and analyzing unstructured, non-Euclidean data ubiquitous in the healthcare domain. Two prominent examples are molecule property prediction and brain connectome analysis. Importantly, recent works…

Machine Learning · Computer Science 2022-04-04 Kamilia Mullakaeva , Luca Cosmo , Anees Kazi , Seyed-Ahmad Ahmadi , Nassir Navab , Michael M. Bronstein

Symbolic regression encompasses a family of search algorithms that aim to discover the best fitting function for a set of data without requiring an a priori specification of the model structure. The most successful and commonly used…

Neural and Evolutionary Computing · Computer Science 2025-08-20 Bogdan Burlacu

Graph learning is naturally well suited for use in symbolic, object-centric planning due to its ability to exploit relational structures exhibited in planning domains and to take as input planning instances with arbitrary numbers of…

Artificial Intelligence · Computer Science 2025-01-08 Dillon Z. Chen , Sylvie Thiébaux

The symbolic architecture of non-ordinary consciousness remains largely unmapped in cognitive science and artificial intelligence. While conventional models prioritize rational coherence, altered states such as those induced by psychedelics…

Neurons and Cognition · Quantitative Biology 2025-04-01 Khalid M. Saqr

Graphs are a key form of Big Data, and performing scalable analytics over them is invaluable to many domains. As our ability to collect data grows, there is an emerging class of inter-connected data which accumulates or varies over time,…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-08-21 Yogesh Simmhan , Charith Wickramaarachchi , Alok Kumbhare , Marc Frincu , Soonil Nagarkar , Santosh Ravi , Cauligi Raghavendra , Viktor Prasanna

We introduce the first, general purpose, slice sampling inference engine for probabilistic programs. This engine is released as part of StocPy, a new Turing-Complete probabilistic programming language, available as a Python library. We…

Artificial Intelligence · Computer Science 2015-01-21 Razvan Ranca , Zoubin Ghahramani