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Phenotyping electronic health records (EHR) focuses on defining meaningful patient groups (e.g., heart failure group and diabetes group) and identifying the temporal evolution of patients in those groups. Tensor factorization has been an…

Machine Learning · Computer Science 2019-11-15 Ardavan Afshar , Ioakeim Perros , Haesun Park , Christopher deFilippi , Xiaowei Yan , Walter Stewart , Joyce Ho , Jimeng Sun

In exploratory tensor mining, a common problem is how to analyze a set of variables across a set of subjects whose observations do not align naturally. For example, when modeling medical features across a set of patients, the number and…

Machine Learning · Computer Science 2017-03-14 Ioakeim Perros , Evangelos E. Papalexakis , Fei Wang , Richard Vuduc , Elizabeth Searles , Michael Thompson , Jimeng Sun

The growing scale of datasets in deep learning has introduced significant computational challenges. Dataset pruning addresses this challenge by constructing a compact but informative coreset from the full dataset with comparable…

Computer Vision and Pattern Recognition · Computer Science 2025-11-19 Furui Xu , Shaobo Wang , Jiajun Zhang , Chenghao Sun , Haixiang Tang , Linfeng Zhang

Given a large tensor, how can we decompose it to sparse core tensor and factor matrices such that it is easier to interpret the results? How can we do this without reducing the accuracy? Existing approaches either output dense results or…

Numerical Analysis · Computer Science 2019-04-10 Moonjeong Park , Jun-Gi Jang , Lee Sael

Computational phenotyping allows for unsupervised discovery of subgroups of patients as well as corresponding co-occurring medical conditions from electronic health records (EHR). Typically, EHR data contains demographic information,…

Machine Learning · Computer Science 2023-10-18 Florian Becker , Age K. Smilde , Evrim Acar

We present a matrix-factorization algorithm that scales to input matrices with both huge number of rows and columns. Learned factors may be sparse or dense and/or non-negative, which makes our algorithm suitable for dictionary learning,…

Machine Learning · Statistics 2017-11-15 Arthur Mensch , Julien Mairal , Bertrand Thirion , Gael Varoquaux

Tensor decomposition has recently been gaining attention in the machine learning community for the analysis of individual traces, such as Electronic Health Records (EHR). However, this task becomes significantly more difficult when the data…

Machine Learning · Computer Science 2024-05-03 Hana Sebia , Thomas Guyet , Etienne Audureau

Large knowledge bases typically contain data adhering to various schemas with incomplete and/or noisy type information. This seriously complicates further integration and post-processing efforts, as type information is crucial in correctly…

Applications · Statistics 2019-02-19 Artem Lutov , Soheil Roshankish , Mourad Khayati , Philippe Cudré-Mauroux

Tensor decompositions, which represent an $N$-order tensor using approximately $N$ factors of much smaller dimensions, can significantly reduce the number of parameters. This is particularly beneficial for high-order tensors, as the number…

Machine Learning · Computer Science 2025-06-23 Zhen Qin , Michael B. Wakin , Zhihui Zhu

Phenotyping is the process of distinguishing groups of patients to identify different types of disease progression. A recent trend employs low-rank matrix and tensor factorization methods for their capability of dealing with multi-modal,…

Machine Learning · Computer Science 2025-06-26 Cristian Minoccheri , Sophia Tesic , Kayvan Najarian , Ryan Stidham

Monitoring network traffic data to detect any hidden patterns of anomalies is a challenging and time-consuming task that requires high computing resources. To this end, an appropriate summarization technique is of great importance, where it…

Machine Learning · Computer Science 2021-12-21 Samira Ghodratnama , Mehrdad Zakershahrak , Fariborz Sobhanmanesh

In this paper, we present an approach to integer factorization using distributed representations formed with Vector Symbolic Architectures. The approach formulates integer factorization in a manner such that it can be solved using neural…

Neural and Evolutionary Computing · Computer Science 2022-09-02 Denis Kleyko , Connor Bybee , Christopher J. Kymn , Bruno A. Olshausen , Amir Khosrowshahi , Dmitri E. Nikonov , Friedrich T. Sommer , E. Paxon Frady

It has been recently shown that sparse, nonnegative tensor factorization of multi-modal electronic health record data is a promising approach to high-throughput computational phenotyping. However, such approaches typically do not leverage…

Machine Learning · Computer Science 2018-08-09 Jette Henderson , Bradley A. Malin , Joyce C. Ho , Joydeep Ghosh

Dynamic tensor data are becoming prevalent in numerous applications. Existing tensor clustering methods either fail to account for the dynamic nature of the data, or are inapplicable to a general-order tensor. Also there is often a gap…

Machine Learning · Statistics 2018-09-17 Will Wei Sun , Lexin Li

Identifying the root causes of outliers is a fundamental problem in causal inference and anomaly detection. Traditional approaches based on heuristics or counterfactual reasoning often struggle under uncertainty and high-dimensional…

Machine Learning · Computer Science 2026-02-02 Phuoc Nguyen , Truyen Tran , Sunil Gupta , Svetha Venkatesh

We propose a new tensor factorization method, called the Sparse Hierarchical-Tucker (Sparse H-Tucker), for sparse and high-order data tensors. Sparse H-Tucker is inspired by its namesake, the classical Hierarchical Tucker method, which aims…

Machine Learning · Computer Science 2016-10-26 Ioakeim Perros , Robert Chen , Richard Vuduc , Jimeng Sun

Scoring systems are linear classification models that only require users to add, subtract and multiply a few small numbers in order to make a prediction. These models are in widespread use by the medical community, but are difficult to…

Machine Learning · Statistics 2017-11-07 Berk Ustun , Cynthia Rudin

Over-parameterized deep models usually over-fit to a given training distribution, which makes them sensitive to small changes and out-of-distribution samples at inference time, leading to low generalization performance. To this end, several…

Computer Vision and Pattern Recognition · Computer Science 2019-12-12 Saeid Asgari Taghanaki , Kumar Abhishek , Ghassan Hamarneh

Existing tensor factorization methods assume that the input tensor follows some specific distribution (i.e. Poisson, Bernoulli, and Gaussian), and solve the factorization by minimizing some empirical loss functions defined based on the…

Machine Learning · Computer Science 2020-12-16 Ardavan Afshar , Kejing Yin , Sherry Yan , Cheng Qian , Joyce C. Ho , Haesun Park , Jimeng Sun

Moving beyond evaluations that collapse performance across heterogeneous prompts toward fine-grained evaluation at the prompt level, or within relatively homogeneous subsets, is necessary to diagnose generative models' strengths and…

Artificial Intelligence · Computer Science 2026-03-05 Felipe Maia Polo , Aida Nematzadeh , Virginia Aglietti , Adam Fisch , Isabela Albuquerque
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