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Attractor models are simplified models used to describe the dynamics of firing rate profiles of a pool of neurons. The firing rate profile, or the neuronal activity, is thought to carry information. Continuous attractor neural networks…

Disordered Systems and Neural Networks · Physics 2015-02-03 C. C. Alan Fung , S. -I. Amari

A single solid tumor, composed of nearly identical cells, exhibits heterogeneous dynamics. Cells dynamics in the core is glass-like whereas those in the periphery undergo diffusive or super-diffusive behavior. Quantification of…

Biological Physics · Physics 2020-11-24 Sumit Sinha , D. Thirumalai

The interplay between 1D traveling pulses with oscillatory tails (TPO) and heterogeneities of bump type is studied for a generalized three-component FitzHugh-Nagumo equation. First, we present that stationary pulses with oscillatory tails…

Dynamical Systems · Mathematics 2022-08-10 Yasumasa Nishiura , Takeshi Watanabe

Soft tissues - such as ligaments and tendons - primarily consist of solid (collagen, predominantly) and liquid phases. Understanding the interaction between such components and how they change under physiological loading sets the basis for…

We use experiments, numerical simulations, and theoretical analysis to investigate the propagation of highly nonlinear solitary waves in periodic arrangements of dimer (two-mass) and trimer (three-mass) cell structures in one-dimensional…

Pattern Formation and Solitons · Physics 2007-12-21 Mason A. Porter , Chiara Daraio , Ivan Szelengowicz , Eric B. Herbold , P. G. Kevrekidis

A review of the present state of investigations of the pseudospin-electron model (PEM), which is used in the theory of strongly correlated electron systems, is given. The model is used to describe the systems with the locally anharmonic…

Strongly Correlated Electrons · Physics 2016-11-23 Ihor Stasyuk

The central nervous system is composed of many individual units -- from cells to areas -- that are connected with one another in a complex pattern of functional interactions that supports perception, action, and cognition. One natural and…

Neurons and Cognition · Quantitative Biology 2017-04-03 Ann E. Sizemore , Danielle S. Bassett

While spiral wave breakup has been implicated in the emergence of atrial fibrillation, its role in maintaining this complex type of cardiac arrhythmia is less clear. We used the Karma model of cardiac excitation to investigate the dynamical…

Tissues and Organs · Quantitative Biology 2017-10-11 Christopher D Marcotte , Roman O Grigoriev

Recent advances in high-resolution experimental methods have highlighted the significance of cell signal pathway crosstalk and localised signalling activity in the development and disease of numerous biological systems. The investigation of…

Dynamical Systems · Mathematics 2022-09-19 Joshua W. Moore , Trevor C. Dale , Thomas E. Woolley

Tilted lattice potentials with periodic driving play a crucial role in the study of artificial gauge fields and topological phases with ultracold quantum gases. However, driving-induced heating and the growth of phonon modes restrict their…

Simultaneous recordings from thousands of neurons across multiple brain areas reveal rich mixtures of activity that are shared between regions and dynamics that are unique to each region. Existing alignment or multi-view methods neglect…

Machine Learning · Computer Science 2025-10-24 Ram Dyuthi Sristi , Sowmya Manojna Narasimha , Jingya Huang , Alice Despatin , Simon Musall , Vikash Gilja , Gal Mishne

Structural and functional heterogeneity are hallmarks of cortical circuits, from broad degree distributions in the mouse connectome to diverse intrinsic neuronal timescales. Yet a mechanistic link between connectivity heterogeneity and…

Neurons and Cognition · Quantitative Biology 2026-03-05 Marco Zenari , Luca Taffarello , Luca Mazzucato , Amos Maritan , Samir Suweis

Many oscillator networks are multistable, meaning that different synchronization states are realized depending on the initial conditions. In this paper, we numerically analyze a ring network of phase oscillators, in which synchronous states…

Adaptation and Self-Organizing Systems · Physics 2026-03-06 Soomin Kim , Hiroshi Kori

We model the phase oscillations of electrons in race-track microtrons by means of an area preserving map with a fixed point at the origin, which represents the synchronous trajectory of a reference particle in the beam. We study the…

Dynamical Systems · Mathematics 2023-09-19 Yu. A. Kubyshin , O. Larreal , R. Ramírez-Ros , T. M. Seara

Models of active nematics in biological systems normally require complexity arising from the hydrodynamics involved at the microscopic level as well as the viscoelastic nature of the system. Here we show that a minimal, space-independent,…

Soft Condensed Matter · Physics 2022-06-27 Emmanuel L. C. VI M. Plan , Huong Le Thi , Julia M. Yeomans , Amin Doostmohammadi

Membrane transporters contribute to the regulation of the internal environment of cells by translocating substrates across cell membranes. Like all physical systems, the behaviour of membrane transporters is constrained by the laws of…

Biomolecules · Quantitative Biology 2023-07-19 Michael Pan , Peter J. Gawthrop , Kenneth Tran , Joseph Cursons , Edmund J. Crampin

We study waves in a chain of dispersively coupled phase oscillators. Two approaches -- a quasi-continuous approximation and an iterative numerical solution of the lattice equation -- allow us to characterize different types of traveling…

Pattern Formation and Solitons · Physics 2011-10-17 Karsten Ahnert , Arkardy Pikovsky

Developing tissues need to pattern themselves in space and time. A prevalent mechanism to achieve this are pulsatile active stresses generated by the actin cytoskeleton. Active gel theory is a powerful tool to model the dynamics of…

Biological Physics · Physics 2023-02-21 Eloy Merlijn de Kinkelder , Elisabeth Fischer-Friedrich , Sebastian Aland

We propose a neural network model with transient chaos, or a transiently chaotic neural network (TCNN) as an approximation method for combinatorial optimization problem, by introducing transiently chaotic dynamics into neural networks.…

chao-dyn · Physics 2008-02-03 Luonan Chen , Kazuyuki Aihara

We study a semilinear hyperbolic system of PDEs which arises as a continuum approximation of the discrete nonlinear dimer array model introduced by Hadad, Vitelli and Alu (HVA) in \cite{HVA17}. We classify the system's traveling waves, and…

Pattern Formation and Solitons · Physics 2024-02-13 Huaiyu Li , Andrew Hofstrand , Michael I. Weinstein