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A contemporary and exciting application of Groebner bases is their use in computational biology, particularly in the reverse engineering of gene regulatory networks from experimental data. In this setting, the data are typically limited to…

Commutative Algebra · Mathematics 2019-07-10 Winfried Just , Brandilyn Stigler

This work aims to accelerate the convergence of proximal gradient methods used to solve regularized linear inverse problems. This is achieved by designing a polynomial-based preconditioner that targets the eigenvalue spectrum of the normal…

We study a general class of convex submodular optimization problems with indicator variables. Many applications such as the problem of inferring Markov random fields (MRFs) with a sparsity or robustness prior can be naturally modeled in…

Optimization and Control · Mathematics 2025-07-09 Shaoning Han , Andrés Gómez

In this paper we introduce a binomial ideal derived from a binary linear code. We present some applications of a Gr\"obner basis of this ideal with respect to a total degree ordering. In the first application we give a decoding method for…

Combinatorics · Mathematics 2007-05-23 M. Borges-Quintana , M. A. Borges-Trenard , P. Fitzpatrick , E. Martinez-Moro

In the field of algebraic systems biology, the number of minimal polynomial models constructed using discretized data from an underlying system is related to the number of distinct reduced Gr\"obner bases for the ideal of the data points.…

Algebraic Geometry · Mathematics 2024-11-19 Anyu Zhang , Brandilyn Stigler

In the last decade, the approximate basis computation of vanishing ideals has been studied extensively in computational algebra and data-driven applications such as machine learning. However, symbolic computation and the dependency on term…

Symbolic Computation · Computer Science 2024-01-02 Hiroshi Kera , Yoshihiko Hasegawa

In this paper we introduce a working generalization of the theory of Gr\"obner bases for algebras of partial difference polynomials with constant coefficients. One obtains symbolic (formal) computation for systems of linear or non-linear…

Rings and Algebras · Mathematics 2013-07-24 Roberto La Scala

We present an approach to solving hard geometric optimization problems in the RANSAC framework. The hard minimal problems arise from relaxing the original geometric optimization problem into a minimal problem with many spurious solutions.…

Computer Vision and Pattern Recognition · Computer Science 2021-12-08 Petr Hruby , Timothy Duff , Anton Leykin , Tomas Pajdla

Utilizing a ray-tracing program, we have modeled the angular resolution of a short focal length (~2m), large field-of-view (3.1 square degrees), grazing incidence mirror shell. It has been previously shown in the literature that the…

This paper describes a Buchberger-style algorithm to compute a Groebner basis of a polynomial ideal, allowing for a selection strategy based on "signatures". We explain how three recent algorithms can be viewed as different strategies for…

Commutative Algebra · Mathematics 2011-06-14 Christian Eder , John Perry

The brain processes information about the environment via neural codes. The neural ideal was introduced recently as an algebraic object that can be used to better understand the combinatorial structure of neural codes. Every neural ideal…

Neurons and Cognition · Quantitative Biology 2018-04-24 Rebecca Garcia , Luis David García Puente , Ryan Kruse , Jessica Liu , Dane Miyata , Ethan Petersen , Kaitlyn Phillipson , Anne Shiu

The problem of polynomial regression in which the usual monomial basis is replaced by the Bernstein basis is considered. The coefficient matrix A of the overdetermined system to be solved in the least squares sense is then a rectangular…

Numerical Analysis · Mathematics 2008-06-18 Ana Marco , Jose-Javier Martinez

We study a general class of convex submodular optimization problems with indicator variables. Many applications such as the problem of inferring Markov random fields (MRFs) with a sparsity or robustness prior can be naturally modeled in…

Optimization and Control · Mathematics 2025-07-08 Andres Gomez , Shaoning Han

The order of smoothness chosen in nonparametric estimation problems is critical. This choice balances the tradeoff between model parsimony and data overfitting. The most common approach used in this context is cross-validation. However,…

Methodology · Statistics 2015-10-13 Daniel Taylor-Rodriguez , Sujit Ghosh

In this paper, an original reduction algorithm for solving simultaneous multivariate polynomial equations is presented. The algorithm is exponential in complexity, but the well-known algorithms, such as the extended Euclidean algorithm and…

General Mathematics · Mathematics 2021-06-01 Duggirala Meher Krishna , Duggirala Ravi

Semidefinite Programming (SDP) and Sums-of-Squares (SOS) relaxations have led to certifiably optimal non-minimal solvers for several robotics and computer vision problems. However, most non-minimal solvers rely on least-squares…

Computer Vision and Pattern Recognition · Computer Science 2020-06-15 Heng Yang , Pasquale Antonante , Vasileios Tzoumas , Luca Carlone

We aim at estimating the fundamental matrix in two views from five correspondences of rotation invariant features obtained by e.g.\ the SIFT detector. The proposed minimal solver first estimates a homography from three correspondences…

Computer Vision and Pattern Recognition · Computer Science 2018-03-02 Daniel Barath

We present and analyse a Monte-Carlo algorithm to compute the minimal polynomial of an $n\times n$ matrix over a finite field that requires $O(n^3)$ field operations and O(n) random vectors, and is well suited for successful practical…

Rings and Algebras · Mathematics 2008-04-07 Max Neunhoeffer , Cheryl E. Praeger

Using tools from algebraic geometry and Groebner basis theory we solve two problems in network coding. First we present a method to determine the smallest field size for which linear network coding is feasible. Second we derive improved…

Information Theory · Computer Science 2008-09-04 Olav Geil , Ryutaroh Matsumoto , Casper Thomsen

Let T(x) in k[x] be a monic non-constant polynomial and write R=k[x] / (T) the quotient ring. Consider two bivariate polynomials a(x, y), b(x, y) in R[y]. In a first part, T = p^e is assumed to be the power of an irreducible polynomial p. A…

Commutative Algebra · Mathematics 2021-09-30 Xavier Dahan