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Predicting the fate of ecologies is a daunting, albeit extremely important, task. As part of this task one needs to develop an understanding of the organization, hierarchies, and correlations among the species forming the ecology. Focusing…

Populations and Evolution · Quantitative Biology 2016-08-31 Ahmed Roman , Debanjan Dasgupta , Michel Pleimling

We present results contrasting food webs constructed using the same model where the source of species was either evolution or immigration from a previously evolved species pool. The overall structure of the webs are remarkably similar,…

Populations and Evolution · Quantitative Biology 2008-08-22 Craig R. Powell , Alan J. McKane

Spatial extent is a complicating factor in mathematical biology. The possibility that an action at point A cannot immediately affect what happens at point B creates the opportunity for spatial nonuniformity. This nonuniformity must change…

Cellular Automata and Lattice Gases · Physics 2014-01-03 Blake C. Stacey , Andreas Gros , Yaneer Bar-Yam

An organism that is newly introduced into an existing population has a survival probability that is dependent on both the population density of its environment and the competition it experiences with the members of that population.…

Populations and Evolution · Quantitative Biology 2024-12-17 Jason M. Gray , Rowan J. Barker-Clarke , Jacob G. Scott , Michael Hinczewski

Network ecology is a rising field of quantitative biology representing ecosystems as complex networks. A suitable example is parasite spreading: several parasites may be transmitted among their hosts through different mechanisms, each one…

Quantitative Methods · Quantitative Biology 2016-09-12 Massimo Stella , Cecilia S. Andreazzi , Sanja Selakovic , Alireza Goudarzi , Alberto Antonioni

Reductions in natural habitats urge that we better understand species' interconnection and how biological communities respond to environmental changes. However, ecological studies of species' interactions are limited by their geographic and…

Methodology · Statistics 2023-02-21 Georgia Papadogeorgou , Carolina Bello , Otso Ovaskainen , David B. Dunson

Ecosystems are formed by networks of species and their interactions. Traditional models of such interactions assume a constant interaction strength between a given pair of species. However, there is often significant trait variation among…

Populations and Evolution · Quantitative Biology 2022-05-03 Zachary Jackson , BingKan Xue

Species interactions (ranging from direct predator prey relationships to indirect effects mediated by the environment) are central to ecosystem balance and biodiversity. While empirical methods for measuring these interactions exist, their…

Populations and Evolution · Quantitative Biology 2025-08-27 Javier Aguilar , Samir Suweis , Amos Maritan , Sandro Azaele

Notable recent works have focused on the multi-layer properties of coevolving diseases. We point out that very similar systems play an important role in population ecology. Specifically we study a meta food-web model that was recently…

Physics and Society · Physics 2016-03-23 Edmund Barter , Thilo Gross

Transformations to create more sustainable social-ecological systems are urgently needed. Structural change is a feature of transformations of social-ecological systems that is of critical importance but is little understood. Here, we…

Adaptation and Self-Organizing Systems · Physics 2017-04-21 Steven J. Lade , Örjan Bodin , Jonathan F. Donges , Elin Enfors Kautsky , Diego Galafassi , Per Olsson , Maja Schlüter

The concentration of the population in coastal regions, in addition to the direct human use, is leading to an accelerated process of change and deterioration of the marine ecosystems. Human activities such as fishing together with…

Climate change threatens biodiversity directly by influencing biophysical variables that drive species' geographic distributions and indirectly through socio-economic changes that influence land use patterns, driven by global consumption,…

Populations and Evolution · Quantitative Biology 2020-02-10 Simon Kapitza , Pham Van Ha , Tom Kompas , Nick Golding , Natasha C. R. Cadenhead , Payal Bal , Brendan A. Wintle

Large-scale structural patterns commonly occur in network models of complex systems including a skewed node degree distribution and small-world topology. These patterns suggest common organizational constraints and similar functional…

Populations and Evolution · Quantitative Biology 2011-04-04 Stuart R. Borrett , Brian D. Fath , Bernard C. Patten

With improvements in data resolution and quality, researchers can now represent complex systems as signed, weighted, and directed networks. In this article, we introduce a framework for measuring net and indirect effects without simplifying…

Physics and Society · Physics 2025-10-10 Carlos Gómez-Ambrosi , Violeta Calleja-Solanas

This chapter aims to inform a practitioner about current methods for predicting potential distributions of invasive species. It mostly addresses single species models, covering the conceptual bases, touching on mechanistic models, and then…

Populations and Evolution · Quantitative Biology 2015-07-31 Jane Elith

We report the results of carrying out a large number of simulations on a coevolutionary model of multispecies communities. A wide range of parameter values were investigated which allowed a rather complete picture of the change in behaviour…

Populations and Evolution · Quantitative Biology 2007-05-23 Christopher Quince , Paul Higgs , Alan McKane

Global environmental change is affecting species distribution and their interactions with other species. In particular, the main drivers of environmental change strongly affect the strength of interspecific interactions with considerable…

Populations and Evolution · Quantitative Biology 2013-08-19 Serguei Saavedra , Rudolf P. Rohr , Vasilis Dakos , Jordi Bascompte

Food webs have been found to exhibit remarkable motif profiles, patterns in the relative prevalences of all possible three-species sub-graphs, and this has been related to ecosystem properties such as stability and robustness. Analysing 46…

Populations and Evolution · Quantitative Biology 2016-09-15 Janis Klaise , Samuel Johnson

Complex socio-environmental interdependencies drive biological invasions, causing damages across large spatial scales. For widespread invasions, targeting of management activities based on optimization approaches may fail due to…

Quantitative Methods · Quantitative Biology 2022-06-07 Jaime Ashander , Kailin Kroetz , Rebecca S Epanchin-Niell , Nicholas B. D. Phelps , Robert G Haight , Laura E. Dee

We present a new model of the evolutionary dynamics and the growth of on-line social networks. The model emulates people's strategies for acquiring information in social networks, emphasising the local subjective view of an individual and…

Social and Information Networks · Computer Science 2013-10-01 Emanuele Massaro , Henrik Olsson , Andrea Guazzini , Franco Bagnoli