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Transfer learning is a de facto standard method for efficiently training machine learning models for data-scarce problems by adding and fine-tuning new classification layers to a model pre-trained on large datasets. Although numerous…

Cryptography and Security · Computer Science 2024-06-21 Seewoo Lee , Garam Lee , Jung Woo Kim , Junbum Shin , Mun-Kyu Lee

pyssam is a Python library for creating statistical shape and appearance models (SSAMs) for biological (and other) shapes such as bones, lungs or other organs. A point cloud best describing the anatomical 'landmarks' of the organ are…

Quantitative Methods · Quantitative Biology 2023-01-12 Josh Williams , Ali Ozel , Uwe Wolfram

Homomorphic encryption (HE) is a promising technology for confidential cloud computing, as it allows computations on encrypted data. However, HE is computationally expensive and often memory-bound on conventional computer architectures.…

Cryptography and Security · Computer Science 2026-05-12 Niklas Klinger , Jonas Sander , Peterson Yuhala , Pascal Felber , Thomas Eisenbarth

Difficulty replicating baselines, high computational costs, and required domain expertise create persistent barriers to clinical AI research. To address these challenges, we introduce PyHealth 2.0, an enhanced clinical deep learning toolkit…

Homomorphic encryption is an encryption method that enables computing over encrypted data. This has a wide range of real world ramifications such as being able to blindly compute a search result sent to a remote server without revealing its…

Cryptography and Security · Computer Science 2016-06-13 Sudharaka Palamakumbura , Hamid Usefi

Event reconstruction in the ILC community has typically relied on algorithms implemented in C++, a fast compiled language. However, the Python package pyLCIO provides a full interface to tracker and calorimeter hits stored in LCIO files,…

Instrumentation and Detectors · Physics 2020-02-17 C. T. Potter

Fully Homomorphic Encryption (FHE) is a relatively recent advancement in the field of privacy-preserving technologies. FHE allows for the arbitrary depth computation of both addition and multiplication, and thus the application of…

Machine Learning · Computer Science 2021-07-29 George Onoufriou , Paul Mayfield , Georgios Leontidis

PyamilySeq is a Python-based tool designed for interpretable gene clustering and pangenomic inference, supporting analyses at both species and genus levels. It facilitates the clustering of gene sequences into families based on sequence…

Genomics · Quantitative Biology 2024-07-30 Nicholas J. Dimonaco

The Python robotics ecosystem faces a challenge: while many libraries exist for rigid body transformations, few are both lightweight and mathematically strict. This paper introduces SE3Kit, a lightweight Python library efficient operations…

Robotics · Computer Science 2026-05-22 Daniyal Maroufi , Omid Rezayof , Farshid Alambeigi

Digital processing-in-memory (PIM) architectures mitigate the memory wall problem by facilitating parallel bitwise operations directly within the memory. Recent works have demonstrated their algorithmic potential for accelerating…

Hardware Architecture · Computer Science 2024-10-01 Orian Leitersdorf , Ronny Ronen , Shahar Kvatinsky

Background: With the rapid growth of massively parallel sequencing technologies, still more laboratories are utilizing sequenced DNA fragments for genomic analyses. Interpretation of sequencing data is, however, strongly dependent on…

It has been a long standing problem to securely outsource computation tasks to an untrusted party with integrity and confidentiality guarantees. While fully homomorphic encryption (FHE) is a promising technique that allows computations…

Cryptography and Security · Computer Science 2019-05-21 Wenhao Wang , Yichen Jiang , Qintao Shen , Weihao Huang , Hao Chen , Shuang Wang , XiaoFeng Wang , Haixu Tang , Kai Chen , Kristin Lauter , Dongdai Lin

Federated Learning is a well-researched approach for collaboratively training machine learning models across decentralized data while preserving privacy. However, integrating Homomorphic Encryption to ensure data confidentiality introduces…

Cryptography and Security · Computer Science 2024-09-13 Jiaxang Tang , Zeshan Fayyaz , Mohammad A. Salahuddin , Raouf Boutaba , Zhi-Li Zhang , Ali Anwar

Python is a popular high-level general-purpose programming language also heavily used by the scientific community. It supports a variety of different programming paradigms and is preferred by many for its ease of use. With the vision of…

Programming Languages · Computer Science 2021-09-08 Maximilian A. Köhl

Privacy has gained a growing interest nowadays due to the increasing and unmanageable amount of produced confidential data. Concerns about the possibility of sharing data with third parties, to gain fruitful insights, beset enterprise…

Cryptography and Security · Computer Science 2020-11-16 Michela Iezzi

Homomorphic encryption (HE) is a privacy-preserving technique that enables computation directly over ciphertext. Unfortunately, a key challenge for HE is that implementations can be impractically slow and have limits on computation that can…

Cryptography and Security · Computer Science 2022-03-08 Hsuan Hsiao , Vincent Lee , Brandon Reagen , Armin Alaghi

Large language model (LLM) based services are primarily structured as client-server interactions, with clients sending queries directly to cloud providers that host LLMs. This approach currently compromises data privacy as all queries must…

Cryptography and Security · Computer Science 2025-12-15 Karthik Garimella , Negar Neda , Austin Ebel , Nandan Kumar Jha , Brandon Reagen

Fully Homomorphic Encryption (FHE) is a cryptographic scheme that enables computations to be performed directly on encrypted data, as if the data were in plaintext. After all computations are performed on the encrypted data, it can be…

Cryptography and Security · Computer Science 2026-04-28 Ronny Ko

Homomorphic Encryption (HE) draws a significant attention as a privacy-preserving way for cloud computing because it allows computation on encrypted messages called ciphertexts. Among numerous HE schemes proposed, HE for Arithmetic of…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-07-15 Wonkyung Jung , Eojin Lee , Sangpyo Kim , Keewoo Lee , Namhoon Kim , Chohong Min , Jung Hee Cheon , Jung Ho Ahn

There are many packages in Python which allow one to perform real-time processing on audio data. Unfortunately, due to the synchronous nature of the language, there lacks a framework which allows for distributed parallel processing of the…

Audio and Speech Processing · Electrical Eng. & Systems 2024-03-18 Nicolas Shu , David V. Anderson