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Species interactions (ranging from direct predator prey relationships to indirect effects mediated by the environment) are central to ecosystem balance and biodiversity. While empirical methods for measuring these interactions exist, their…

Populations and Evolution · Quantitative Biology 2025-08-27 Javier Aguilar , Samir Suweis , Amos Maritan , Sandro Azaele

Over the last few decades, ecologists have come to appreciate that key ecological patterns, which describe ecological communities at relatively large spatial scales, are not only scale dependent, but also intimately intertwined. The…

Populations and Evolution · Quantitative Biology 2016-09-13 Fabio Peruzzo , Sandro Azaele

An organism that is newly introduced into an existing population has a survival probability that is dependent on both the population density of its environment and the competition it experiences with the members of that population.…

Populations and Evolution · Quantitative Biology 2024-12-17 Jason M. Gray , Rowan J. Barker-Clarke , Jacob G. Scott , Michael Hinczewski

Understanding the assembly of ecosystems to estimate the number of species at different spatial scales is a challenging problem. Until now, maximum entropy approaches have lacked the important feature of considering space in an explicit…

Populations and Evolution · Quantitative Biology 2014-07-10 Matteo Adorisio , Jacopo Grilli , Samir Suweis , Sandro Azaele , Jayanth R. Banavar , Amos Maritan

In order to understand the role of space in ecological communities where each species produces a certain type of resource and has varying abilities to exploit the resources produced by its own species and by the other species, we carry out…

Dynamical Systems · Mathematics 2011-02-14 Yun Kang , Nicolas Lanchier

We propose a method for detecting significant interactions in very large multivariate spatial point patterns. This methodology develops high dimensional data understanding in the point process setting. The method is based on modelling the…

Methodology · Statistics 2017-10-25 Tuomas Rajala , David Murrell , Sofia Olhede

The significant role of space in maintaining species coexistence and determining community structure and function is well established. However, community ecology studies have mainly focused on simple competition and predation systems, and…

Populations and Evolution · Quantitative Biology 2010-08-09 Elise Filotas , Martin Grant , Lael Parrott , Per Arne Rikvold

We present new theoretical and empirical results on the probability distributions of species persistence times in natural ecosystems. Persistence times, defined as the timespans occurring between species' colonization and local extinction…

Populations and Evolution · Quantitative Biology 2012-03-21 S. Suweis , E. Bertuzzo , L. Mari , I. Rodriguez-Iturbe , A. Maritan , A. Rinaldo

There is no much doubt that biotic interactions shape community assembly and ultimately the spatial co-variations between species. There is a hope that the signal of these biotic interactions can be observed and retrieved by investigating…

Machine Learning · Statistics 2025-07-15 Sara Si-Moussi , Esther Galbrun , Mickael Hedde , Giovanni Poggiato , Matthias Rohr , Wilfried Thuiller

The distributions of species lifetimes and species in space are related, since species with good local survival chances have more time to colonize new habitats and species inhabiting large areas have higher chances to survive local…

Populations and Evolution · Quantitative Biology 2019-02-18 Tobias Rogge , David Jones , Barbara Drossel , Korinna T. Allhoff

During the last decades macroecology has identified broad-scale patterns of abundances and diversity of microbial communities and put forward some potential explanations for them. However, these advances are not paralleled by a full…

Populations and Evolution · Quantitative Biology 2024-01-26 José Camacho-Mateu , Aniello Lampo , Matteo Sireci , Miguel Ángel Muñoz , José A. Cuesta

Natural ecosystems are characterized by striking diversity of form and functions and yet exhibit deep symmetries emerging across scales of space, time and organizational complexity. Species-area relationships and species-abundance…

Ecological communities with many species can be classified into dynamical phases. In systems with all-to-all interactions, a phase where a fixed point is always reached and a dynamically-fluctuating phase have been found. The dynamics when…

Populations and Evolution · Quantitative Biology 2023-08-04 Stav Marcus , Ari M Turner , Guy Bunin

Community detection is an important tool for exploring and classifying the properties of large complex networks and should be of great help for spatial networks. Indeed, in addition to their location, nodes in spatial networks can have…

Physics and Society · Physics 2012-06-01 Federica Cerina , Vincenzo De Leo , Marc Barthelemy , Alessandro Chessa

The presence of one or more species at some spatial locations but not others is a central matter in ecology. This phenomenon is related to ecological pattern formation. Nonlocal interactions can be considered as one of the mechanisms…

Populations and Evolution · Quantitative Biology 2017-12-29 Ozgur Aydogmus

Ecosystems are formed by networks of species and their interactions. Traditional models of such interactions assume a constant interaction strength between a given pair of species. However, there is often significant trait variation among…

Populations and Evolution · Quantitative Biology 2022-05-03 Zachary Jackson , BingKan Xue

Joint species distribution modeling is attracting increasing attention these days, acknowledging the fact that individual level modeling fails to take into account expected dependence/interaction between species. These models attempt to…

Methodology · Statistics 2019-08-27 Alan E. Gelfand , Shinichiro Shirota

Global environmental change is affecting species distribution and their interactions with other species. In particular, the main drivers of environmental change strongly affect the strength of interspecific interactions with considerable…

Populations and Evolution · Quantitative Biology 2013-08-19 Serguei Saavedra , Rudolf P. Rohr , Vasilis Dakos , Jordi Bascompte

The assembly of ecological communities from a pool of species is central to ecology, but the effect of this process on properties of community interaction networks is still largely unknown. Here, we use a systematic analytical framework to…

Populations and Evolution · Quantitative Biology 2016-07-19 Guy Bunin

Ecosystems display a complex spatial organization. Ecologists have long tried to characterize them by looking at how different measures of biodiversity change across spatial scales. Ecological neutral theory has provided simple predictions…

Populations and Evolution · Quantitative Biology 2017-12-13 Simone Pigolotti , Massimo Cencini , Daniel Molina , Miguel A. Muñoz
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