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Graph learning aims to infer a network structure directly from observed data, enabling the analysis of complex dependencies in irregular domains. Traditional methods focus on scalar signals at each node, ignoring dependencies along…

Signal Processing · Electrical Eng. & Systems 2026-05-08 Andrei Buciulea , Bishwadeep Das , Elvin Isufi , Antonio G. Marques

This paper (parts I and II) provides an expository introduction to monotone and near-monotone dynamical systems associated to biochemical networks, those whose graphs are consistent or near-consistent. Many conclusions can be drawn from…

Molecular Networks · Quantitative Biology 2007-05-23 Eduardo D. Sontag

Understanding and predicting how complex systems respond to external perturbations is a central challenge in nonequilibrium statistical physics. Here we consider continuous-time Markov networks, which we subject to perturbations along a…

Statistical Mechanics · Physics 2026-02-25 Robin Bebon , Thomas Speck

We consider a nonlinear dynamical system on a signed graph, which can be interpreted as a mathematical model of social networks in which the links can have both positive and negative connotations. In accordance with a concept from social…

Social and Information Networks · Computer Science 2015-06-16 Tyler H. Summers , Iman Shames

Reconstructing noise-driven nonlinear networks from time series of output variables is a challenging problem, which turns to be very difficult when nonlinearity of dynamics, strong noise impacts and low measurement frequencies jointly…

Statistical Mechanics · Physics 2017-10-20 Rundong Shi , Gang Hu , Shihong Wang

Observability quantification is a key problem in dynamic network sciences. While it has been thoroughly studied for linear systems, observability quantification for nonlinear networks is less intuitive and more cumbersome. One common…

Systems and Control · Electrical Eng. & Systems 2025-11-03 Mohamad H. Kazma , Ahmad F. Taha

Dynamical processes on networks are currently being considered in different domains of cross-disciplinary interest. Reaction-diffusion systems hosted on directed graphs are in particular relevant for their widespread applications, from…

Statistical Mechanics · Physics 2016-04-06 Silvia Contemori , Francesca Di Patti , Duccio Fanelli , Filippo Miele

Minimal input/output selection is investigated in this paper for each subsystem of a networked system. Some novel sufficient conditions are derived respectively for the controllability and observability of a networked system, as well as…

Optimization and Control · Mathematics 2019-10-15 Tong Zhou

Can evolving networks be inferred and modeled without directly observing their nodes and edges? In many applications, the edges of a dynamic network might not be observed, but one can observe the dynamics of stochastic cascading processes…

Machine Learning · Computer Science 2019-02-26 Elahe Ghalebi , Baharan Mirzasoleiman , Radu Grosu , Jure Leskovec

Dynamical systems theory has long provided a foundation for understanding evolving phenomena across scientific domains. Yet, the application of this theory to complex real-world systems remains challenging due to issues in mathematical…

Machine Learning · Computer Science 2024-11-05 Samuel A. Moore , Brian P. Mann , Boyuan Chen

Graphs have become pervasive tools to represent information and datasets with irregular support. However, in many cases, the underlying graph is either unavailable or naively obtained, calling for more advanced methods to its estimation.…

Signal Processing · Electrical Eng. & Systems 2023-03-14 Andrei Buciulea , Antonio G. Marques

Estimating the structure of directed acyclic graphs (DAGs) of features (variables) plays a vital role in revealing the latent data generation process and providing causal insights in various applications. Although there have been many…

Machine Learning · Computer Science 2024-03-06 Shaohua Fan , Shuyang Zhang , Xiao Wang , Chuan Shi

Real-world graphs, such as social networks, financial transactions, and recommendation systems, often demonstrate dynamic behavior. This phenomenon, known as graph stream, involves the dynamic changes of nodes and the emergence and…

Machine Learning · Computer Science 2023-05-16 Yanping Zheng , Zhewei Wei , Jiajun Liu

There is a deep and interesting connection between the topological properties of a graph and the behaviour of the dynamical system defined on it. We analyse various kind of graphs, with different contrasting connectivity or degree…

Combinatorics · Mathematics 2017-05-01 Barbara Giunti , Vincenzo Perri

Differential equations are a ubiquitous tool to study dynamics, ranging from physical systems to complex systems, where a large number of agents interact through a graph with non-trivial topological features. Data-driven approximations of…

Statistical Mechanics · Physics 2024-04-26 Vaiva Vasiliauskaite , Nino Antulov-Fantulin

Temporal networks model how the interaction between elements in a complex system evolve over time. Just like complex systems display collective dynamics, here we interpret temporal networks as trajectories performing a collective motion in…

Social and Information Networks · Computer Science 2022-10-18 Lucas Lacasa , Jorge P. Rodriguez , Victor M. Eguiluz

We consider a networked linear dynamical system with $p$ agents/nodes. We study the problem of learning the underlying graph of interactions/dependencies from observations of the nodal trajectories over a time-interval $T$. We present a…

Machine Learning · Computer Science 2022-05-09 Harish Doddi , Deepjyoti Deka , Saurav Talukdar , Murti Salapaka

This paper considers the problem of learning, from samples, the dependency structure of a system of linear stochastic differential equations, when some of the variables are latent. In particular, we observe the time evolution of some…

Machine Learning · Computer Science 2012-05-02 Ali Jalali , Sujay Sanghavi

The recent paper by W.-X. Wang, Y.-C. Lai, J. Ren, B. Li & C. Grebogi [arXiv:1107.2177v1] proposed a method for the control of complex networks with nonlinear dynamics based on linearizing the system around a finite number of local desired…

Disordered Systems and Neural Networks · Physics 2011-09-01 Jie Sun , Sean P. Cornelius , William L. Kath , Adilson E. Motter

We address the problem of inferring an undirected graph from nodal observations, which are modeled as non-stationary graph signals generated by local diffusion dynamics that depend on the structure of the unknown network. Using the…

Signal Processing · Electrical Eng. & Systems 2019-02-01 Rasoul Shafipour , Santiago Segarra , Antonio G. Marques , Gonzalo Mateos