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A commonly used paradigm for representing graphs is to use a vector that contains normalized frequencies of occurrence of certain motifs or sub-graphs. This vector representation can be used in a variety of applications, such as, for…

Machine Learning · Computer Science 2014-03-05 Pinar Yanardag , S. V. N. Vishwanathan

Higher-order connectivity patterns such as small induced sub-graphs called graphlets (network motifs) are vital to understand the important components (modules/functional units) governing the configuration and behavior of complex networks.…

Social and Information Networks · Computer Science 2020-09-15 Aldo G. Carranza , Ryan A. Rossi , Anup Rao , Eunyee Koh

We introduce a nonlinear method for directly embedding large, sparse, stochastic graphs into low-dimensional spaces, without requiring vertex features to reside in, or be transformed into, a metric space. Graph data and models are prevalent…

Machine Learning · Computer Science 2019-06-14 Nikos Pitsianis , Alexandros-Stavros Iliopoulos , Dimitris Floros , Xiaobai Sun

Graph embedding provides a feasible methodology to conduct pattern classification for graph-structured data by mapping each data into the vectorial space. Various pioneering works are essentially coding method that concentrates on a…

Machine Learning · Computer Science 2022-10-04 Xue Liu , Dan Sun , Xiaobo Cao , Hao Ye , Wei Wei

This paper introduces a novel approach to learn visually grounded meaning representations of words as low-dimensional node embeddings on an underlying graph hierarchy. The lower level of the hierarchy models modality-specific word…

Computation and Language · Computer Science 2021-09-08 Mariella Dimiccoli , Herwig Wendt , Pau Batlle

The paper addresses challenges in storing and retrieving sequences in contexts like anomaly detection, behavior prediction, and genetic information analysis. Associative Knowledge Graphs (AKGs) offer a promising approach by leveraging…

Artificial Intelligence · Computer Science 2025-09-11 Przemysław Stokłosa , Janusz A. Starzyk , Paweł Raif , Adrian Horzyk , Marcin Kowalik

Modern graph embedding procedures can efficiently process graphs with millions of nodes. In this paper, we propose GEMSEC -- a graph embedding algorithm which learns a clustering of the nodes simultaneously with computing their embedding.…

Social and Information Networks · Computer Science 2019-07-26 Benedek Rozemberczki , Ryan Davies , Rik Sarkar , Charles Sutton

Graph-based recommender systems (GRSs) analyze the structural information in the graphical representation of data to make better recommendations, especially when the direct user-item relation data is sparse. Ranking-oriented GRSs that form…

Information Retrieval · Computer Science 2020-08-03 Taher Hekmatfar , Saman Haratizadeh , Sama Goliaei

Graph representation learning is a fast-growing field where one of the main objectives is to generate meaningful representations of graphs in lower-dimensional spaces. The learned embeddings have been successfully applied to perform various…

Machine Learning · Computer Science 2021-12-21 Md. Khaledur Rahman , Ariful Azad

Graph Nerual Networks (GNNs) are effective models in graph embedding. It extracts shallow features and neighborhood information by aggregating neighbor information to learn the embedding representation of different nodes. However, the local…

Social and Information Networks · Computer Science 2023-12-14 Kejia Zhang

Recently, graph neural networks have been widely used for network embedding because of their prominent performance in pairwise relationship learning. In the real world, a more natural and common situation is the coexistence of pairwise…

Social and Information Networks · Computer Science 2021-01-19 Xiangguo Sun , Hongzhi Yin , Bo Liu , Hongxu Chen , Jiuxin Cao , Yingxia Shao , Nguyen Quoc Viet Hung

Learning universal graph representations across heterogeneous domains is difficult because graph datasets differ in topology, node-attribute semantics, feature dimensions, and even attribute availability. We propose GraphVec, a…

Machine Learning · Computer Science 2026-05-08 Qi Feng , Jicong Fan

A significant portion of the data today, e.g, social networks, web connections, etc., can be modeled by graphs. A proper analysis of graphs with Machine Learning (ML) algorithms has the potential to yield far-reaching insights into many…

Social and Information Networks · Computer Science 2020-09-11 Taha Atahan Akyildiz , Amro Alabsi Aljundi , Kamer Kaya

We introduce the Graph Sylvester Embedding (GSE), an unsupervised graph representation of local similarity, connectivity, and global structure. GSE uses the solution of the Sylvester equation to capture both network structure and…

Machine Learning · Computer Science 2022-05-10 Shay Deutsch , Stefano Soatto

Proteins perform much of the work in living organisms, and consequently the development of efficient computational methods for protein representation is essential for advancing large-scale biological research. Most current approaches…

Quantitative Methods · Quantitative Biology 2023-06-09 Francesco Ceccarelli , Lorenzo Giusti , Sean B. Holden , Pietro Liò

Graph embedding is a transformation of nodes of a graph into a set of vectors. A~good embedding should capture the graph topology, node-to-node relationship, and other relevant information about the graph, its subgraphs, and nodes. If these…

Social and Information Networks · Computer Science 2022-06-22 Arash Dehghan-Kooshkghazi , Bogumił Kamiński , Łukasz Kraiński , Paweł Prałat , François Théberge

Graph embedding has been widely applied in areas such as network analysis, social network mining, recommendation systems, and bioinformatics. However, current graph construction methods often require the prior definition of neighborhood…

Machine Learning · Computer Science 2025-10-08 S. Peng , L. Hu , W. Zhang , B. Jie , Y. Luo

Advanced graph neural networks have shown great potentials in graph classification tasks recently. Different from node classification where node embeddings aggregated from local neighbors can be directly used to learn node labels, graph…

Machine Learning · Computer Science 2022-03-16 Hao Jia , Junzhong Ji , Minglong Lei

Graph embedding aims at learning a vector-based representation of vertices that incorporates the structure of the graph. This representation then enables inference of graph properties. Existing graph embedding techniques, however, do not…

Patterns stored within pre-trained deep neural networks compose large and powerful descriptive languages that can be used for many different purposes. Typically, deep network representations are implemented within vector embedding spaces,…

Neural and Evolutionary Computing · Computer Science 2017-08-10 Dario Garcia-Gasulla , Armand Vilalta , Ferran Parés , Jonatan Moreno , Eduard Ayguadé , Jesus Labarta , Ulises Cortés , Toyotaro Suzumura