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Error-bounded lossy compression has been widely adopted in many scientific domains because it can address the challenges in storing, transferring, and analyzing unprecedented amounts of scientific data. Although error-bounded lossy…
Electronic structure and transport in realistically-sized systems often require an open quantum system (OQS) treatment, where the system is defined in the context of an environment. As OQS evolution is non-unitary, implementation on quantum…
Measurement-based quantum computing uses measurement patterns on predefined quantum resource states to execute quantum logic. Quantum simulation offers an important use case on near-term devices. However, pattern optimization depends on the…
The human neuromuscular system consisting of skeletal muscles and neural circuits is a complex system that is not yet fully understood. Surface electromyography (EMG) can be used to study muscle behavior from the outside. Computer…
The structure uncertainty optimization problem is usually treated as double-loop optimization process, which is computation-intensive. In this paper, an efficient interval uncertainty optimization approach based on Quasi-sparse response…
Medical image segmentation is inherently uncertain. For a given image, there may be multiple plausible segmentation hypotheses, and physicians will often disagree on lesion and organ boundaries. To be suited to real-world application,…
The integration of AI in digital pathology, particularly in whole slide image (WSI) and spatial transcriptomics (ST) analysis, holds immense potential for enhancing our understanding of diseases. Despite challenges such as training pattern…
Estimation of physical observables for unknown quantum states is an important problem that underlies a wide range of fields, including quantum information processing, quantum physics, and quantum chemistry. In the context of quantum…
KonfAI is a modular, extensible, and fully configurable deep learning framework specifically designed for medical imaging tasks. It enables users to define complete training, inference, and evaluation workflows through structured YAML…
Quantifying segmentation uncertainty has become an important issue in medical image analysis due to the inherent ambiguity of anatomical structures and its pathologies. Recently, neural network-based uncertainty quantification methods have…
Understanding the applicability and limitations of electronic-structure methods needs careful and efficient comparison with accurate reference data. Knowledge of the quality and errors of electronic-structure calculations is crucial to…
Quantitative ultrasound (QUS) aims to find properties of scatterers which are related to the tissue microstructure. Among different QUS parameters, scatterer number density has been found to be a reliable biomarker for detecting different…
This paper introduces CUQIpy, a versatile open-source Python package for computational uncertainty quantification (UQ) in inverse problems, presented as Part I of a two-part series. CUQIpy employs a Bayesian framework, integrating prior…
BerkeleyGW is a massively parallel computational package for electron excited-state properties that is based on the many-body perturbation theory employing the ab initio GW and GW plus Bethe-Salpeter equation methodology. It can be used in…
This paper introduces a novel quantum embedding search algorithm (QES, pronounced as "quest"), enabling search for optimal quantum embedding design for a specific dataset of interest. First, we establish the connection between the…
Quantum image processing employs quantum computing to capture, manipulate, and recover images in various formats. This requires representations of encoded images using the quantum mechanical composition of any potential computing hardware.…
These are lecture notes for five sessions in the AMSI Winter School on 'Computational Modelling of Heterogeneous Media' held at QUT in July 2019 [https://ws.amsi.org.au/]. Aim: Discuss a mix of new mathematical approaches for multiscale…
The field of digital pathology has seen a proliferation of deep learning models in recent years. Despite substantial progress, it remains rare for other researchers and pathologists to be able to access models published in the literature…
Accurate survival prediction from histopathology whole-slide images (WSIs) remains challenging due to their gigapixel resolution, strong spatial heterogeneity, and complex survival distributions. We introduce a comprehensive computational…
Healthcare applications are inherently multimodal, benefiting greatly from the integration of diverse data sources. However, the modalities available in clinical settings can vary across different locations and patients. A key area that…