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Wheat is an important source of dietary fiber and protein that is negatively impacted by a number of risks to its growth. The difficulty of identifying and classifying wheat diseases is discussed with an emphasis on wheat loose smut, leaf…

Computer Vision and Pattern Recognition · Computer Science 2025-01-22 Sajjad Saleem , Adil Hussain , Nabila Majeed , Zahid Akhtar , Kamran Siddique

Since early 2024, highly pathogenic avian influenza virus (HPAIV) H5N1 of clade 2.3.4.4b has spilled over from wild birds to dairy cattle in the United States (U.S.), spreading to more than 1000 herds and threatening both animal and public…

Populations and Evolution · Quantitative Biology 2026-03-12 You Chang , Jose L. Gonzales , Erik Rattenborg , Mart C. M. de Jong , Beate Conrady

Most antigenically novel and evolutionarily successful strains of seasonal influenza A (H3N2) originate in East, South, and Southeast Asia. To understand this pattern, we simulated the ecological and evolutionary dynamics of influenza in a…

Populations and Evolution · Quantitative Biology 2016-08-31 Frank Wen , Trevor Bedford , Sarah Cobey

The evolution of the hemagglutinin amino acids sequences of Influenza A virus is studied by a method based on an informational metrics, originally introduced by Rohlin for partitions in abstract probability spaces. This metrics does not…

Populations and Evolution · Quantitative Biology 2015-06-03 Raffaella Burioni , Riccardo Scalco , Mario Casartelli

Knowledge of the severity of an influenza outbreak is crucial for informing and monitoring appropriate public health responses, both during and after an epidemic. However, case-fatality, case-intensive care admission and…

Despite having triggered devastating pandemics in the past, our ability to quantitatively assess the emergence potential of individual strains of animal influenza viruses remains limited. This study introduces Emergenet, a tool to infer a…

Populations and Evolution · Quantitative Biology 2024-11-27 Kevin Yuanbo Wu , Jin Li , Aaron Esser-Kahn , Ishanu Chattopadhyay

Insects are an integral part of our ecosystem. These often small and evasive animals have a big impact on their surroundings, providing a large part of the present biodiversity and pollination duties, forming the foundation of the food…

Sound · Computer Science 2022-11-18 Marius Faiß

Deep learning approaches have shown great success in image classification tasks and can aid greatly towards the fast and reliable classification of pollen grain aerial imagery. However, often-times deep learning methods in the setting of…

Computer Vision and Pattern Recognition · Computer Science 2021-03-01 Jaideep Murkute

A principal component analysis of a multiple sequence alignement of hemagglutinin sequences of subtype H1 has been performed, the sequences being encoded using the amino-acid property that maximizes the weight of the major component. In the…

Biomolecules · Quantitative Biology 2018-03-16 Yves-Henri Sanejouand

Infectious diseases are one of the leading causes of morbidity and mortality around the world; thus, forecasting their impact is crucial for planning an effective response strategy. According to the Centers for Disease Control and…

Populations and Evolution · Quantitative Biology 2015-05-18 Kyle S. Hickmann , Geoffrey Fairchild , Reid Priedhorsky , Nicholas Generous , James M. Hyman , Alina Deshpande , Sara Y. Del Valle

Influenza is a contagious respiratory illness that causes significant human morbidity and mortality, affecting 5-15% of the population in a typical epidemic season. Human influenza epidemics are caused by types A and B, with roughly 25% of…

Populations and Evolution · Quantitative Biology 2016-10-14 Yidan Pan , Michael W. Deem

Seasonal influenza infects between 10 and 50 million people in the United States every year, overburdening hospitals during weeks of peak incidence. Named by the CDC as an important tool to fight the damaging effects of these epidemics,…

Applications · Statistics 2020-05-19 Thomas McAndrew , Nicholas G. Reich

Air pollution is a significant health concern worldwide, contributing to various respiratory diseases. Advances in air quality mapping, driven by the emergence of smart cities and the proliferation of Internet-of-Things sensor devices, have…

Computer Vision and Pattern Recognition · Computer Science 2024-05-08 Anvita Mahajan , Sayali Mate , Chinmayee Kulkarni , Suraj Sawant

The evolutionary dynamics of human Influenza A virus presents a challenging theoretical problem. An extremely high mutation rate allows the virus to escape, at each epidemic season, the host immune protection elicited by previous…

Populations and Evolution · Quantitative Biology 2016-11-30 Lorenzo Taggi , Francesca Colaiori , Vittorio Loreto , Francesca Tria

Over the last ten years, the US Centers for Disease Control and Prevention (CDC) has organized an annual influenza forecasting challenge with the motivation that accurate probabilistic forecasts could improve situational awareness and yield…

Machine Learning · Statistics 2024-07-30 Evan L. Ray , Yijin Wang , Russell D. Wolfinger , Nicholas G. Reich

Deep learning Convolutional Neural Network (CNN) models are powerful classification models but require a large amount of training data. In niche domains such as bird acoustics, it is expensive and difficult to obtain a large number of…

Computer Vision and Pattern Recognition · Computer Science 2019-09-18 Dina B. Efremova , Mangalam Sankupellay , Dmitry A. Konovalov

One Health issues, such as the spread of highly pathogenic avian influenza~(HPAI), present significant challenges at the human-animal-environmental interface. Recent H5N1 outbreaks underscore the need for comprehensive modeling efforts that…

Computational Engineering, Finance, and Science · Computer Science 2026-03-06 Abhijin Adiga , Ayush Chopra , Mandy L. Wilson , S. S. Ravi , Dawen Xie , Samarth Swarup , Bryan Lewis , Andrew Warren , John Barnes , Ramesh Raskar , Madhav V. Marathe

Insect population numbers and biodiversity have been rapidly declining with time, and monitoring these trends has become increasingly important for conservation measures to be effectively implemented. But monitoring methods are often…

Sound · Computer Science 2024-02-01 Marius Faiß , Dan Stowell

Identification of the influential clinical symptoms and laboratory features that help in the diagnosis of dengue fever in early phase of the illness would aid in designing effective public health management and virological surveillance…

Machine Learning · Statistics 2015-02-03 Vadrevu Sree Hari Rao , Mallenahalli Naresh Kumar

Pumpkin leaf diseases are significant threats to agricultural productivity, requiring a timely and precise diagnosis for effective management. Traditional identification methods are laborious and susceptible to human error, emphasizing the…

Computer Vision and Pattern Recognition · Computer Science 2025-04-11 Md. Arafat Alam Khandaker , Ziyan Shirin Raha , Shifat Islam , Tashreef Muhammad