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In a previous work, we gave a metric on the class of semibinary tree-sibling time consistent phylogenetic networks that is computable in polynomial time; in particular, the problem of deciding if two networks of this kind are isomorphic is…

Populations and Evolution · Quantitative Biology 2009-02-27 Gabriel Cardona , Merce Llabres , Francesc Rossello , Gabriel Valiente

Subgraph isomorphism is a well-known NP-hard problem that is widely used in many applications, such as social network analysis and query over the knowledge graph. Due to the inherent hardness, its performance is often a bottleneck in…

Databases · Computer Science 2021-04-21 Li Zeng , Lei Zou , M. Tamer Özsu , Lin Hu , Fan Zhang

Partitioning the vertices of a graph into two roughly equal parts while minimizing the number of edges crossing the cut is a fundamental problem (called Balanced Separator) that arises in many settings. For this problem, and variants such…

Computational Complexity · Computer Science 2015-03-20 Venkatesan Guruswami , Ali Kemal Sinop , Yuan Zhou

Problems related to graph matching and isomorphisms are very important both from a theoretical and practical perspective, with applications ranging from image and video analysis to biological and biomedical problems. The graph matching…

Combinatorics · Mathematics 2014-09-29 Marcelo Fiori , Guillermo Sapiro

We give a 2-approximation algorithm for Non-Uniform Sparsest Cut that runs in time $n^{O(k)}$, where $k$ is the treewidth of the graph. This improves on the previous $2^{2^k}$-approximation in time $\poly(n) 2^{O(k)}$ due to Chlamt\'a\v{c}…

Data Structures and Algorithms · Computer Science 2013-05-08 Anupam Gupta , Kunal Talwar , David Witmer

The complexity of classical computational problems in graph classes defined by forbidding induced subgraphs is one of the central topics of algorithmic graph theory. Recently, there has been a growing interest in the complexity of such…

Data Structures and Algorithms · Computer Science 2026-04-28 Paweł Rafał Bieliński , Marta Piecyk , Paweł Rzążewski

Graphs are fundamental objects that find widespread applications across computer science and beyond. Graph Theory has yielded deep insights about structural properties of various families of graphs, which are leveraged in the design and…

Data Structures and Algorithms · Computer Science 2023-08-30 Rachit Nimavat

Graph matching---aligning a pair of graphs to minimize their edge disagreements---has received wide-spread attention from both theoretical and applied communities over the past several decades, including combinatorics, computer vision, and…

The Weisfeiler-Leman dimension of a graph $G$ is the least number $k$ such that the $k$-dimensional Weisfeiler-Leman algorithm distinguishes $G$ from every other non-isomorphic graph. The dimension is a standard measure of the descriptive…

Computational Complexity · Computer Science 2024-11-18 Moritz Lichter , Simon Raßmann , Pascal Schweitzer

Graph matching involves combinatorial optimization based on edge-to-edge affinity matrix, which can be generally formulated as Lawler's Quadratic Assignment Problem (QAP). This paper presents a QAP network directly learning with the…

Machine Learning · Computer Science 2021-05-07 Runzhong Wang , Junchi Yan , Xiaokang Yang

We consider the classic problem of Network Reliability. A network is given together with a source vertex, one or more target vertices, and probabilities assigned to each of the edges. Each edge appears in the network with its associated…

Combinatorics · Mathematics 2019-03-20 Amir Kafshdar Goharshady , Fatemeh Mohammadi

Given a matrix $A$, a matrix nearness problem seeks an $X$ that most closely approximates $A$ in the sense of minimizing $\lVert A - X\rVert$ under a variety of constraints on $X$. A generalized matrix nearness problem seeks the same but…

Numerical Analysis · Mathematics 2026-05-29 Rongbiao Thomas Wang , Chi-Kwong Li , Lek-Heng Lim

We study the problem of approximating the value of the matching polynomial on graphs with edge parameter $\gamma$, where $\gamma$ takes arbitrary values in the complex plane. When $\gamma$ is a positive real, Jerrum and Sinclair showed that…

Discrete Mathematics · Computer Science 2021-01-13 Ivona Bezakova , Andreas Galanis , Leslie Ann Goldberg , Daniel Stefankovic

This paper deals with the problem of graph matching or network alignment for Erd\H{o}s--R\'enyi graphs, which can be viewed as a noisy average-case version of the graph isomorphism problem. Let $G$ and $G'$ be $G(n, p)$ Erd\H{o}s--R\'enyi…

Statistics Theory · Mathematics 2022-07-08 Cheng Mao , Mark Rudelson , Konstantin Tikhomirov

The generic homomorphism problem, which asks whether an input graph $G$ admits a homomorphism into a fixed target graph $H$, has been widely studied in the literature. In this article, we provide a fine-grained complexity classification of…

Computational Complexity · Computer Science 2022-10-14 Robert Ganian , Thekla Hamm , Viktoriia Korchemna , Karolina Okrasa , Kirill Simonov

Given a graph G, the {\em maximum internal spanning tree problem} (MIST for short) asks for computing a spanning tree T of G such that the number of internal vertices in T is maximized. MIST has possible applications in the design of…

Data Structures and Algorithms · Computer Science 2016-08-02 Zhi-Zhong Chen , Youta Harada , Lusheng Wang

One of the first graph theoretical problems which got serious attention (already in the fifties of the last century) was to decide whether a given integer sequence is equal to the degree sequence of a simple graph (or it is {\em graphical}…

Combinatorics · Mathematics 2021-01-01 Péter L. Erdős , Zoltán Király , István Miklós

Spectral graph bisections are a popular heuristic aimed at approximating the solution of the NP-complete graph bisection problem. This technique, however, does not always provide a robust tool for graph partitioning. Using a special class…

Numerical Analysis · Mathematics 2015-12-22 John C. Urschel , Ludmil T. Zikatanov

The graph edit distance is an intuitive measure to quantify the dissimilarity of graphs, but its computation is NP-hard and challenging in practice. We introduce methods for answering nearest neighbor and range queries regarding this…

Databases · Computer Science 2022-07-20 Franka Bause , Erich Schubert , Nils M. Kriege

We propose a simple yet effective metric that measures structural similarity between visual instances of architectural floor plans, without the need for learning. Qualitatively, our experiments show that the retrieval results are similar to…

Computer Vision and Pattern Recognition · Computer Science 2023-09-11 Casper van Engelenburg , Seyran Khademi , Jan van Gemert
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