Related papers: A framework for cost-constrained genome rearrangem…
A minimum $s$-$t$ cut in a hypergraph is a bipartition of vertices that separates two nodes $s$ and $t$ while minimizing a hypergraph cut function. The cardinality-based hypergraph cut function assigns a cut penalty to each hyperedge based…
There has recently been much progress on exact algorithms for the (un)weighted graph (bi)partitioning problem using branch-and-bound and related methods. In this note we present and improve an easily computable, purely combinatorial lower…
Circular layouts are a popular graph drawing style, where vertices are placed on a circle and edges are drawn as straight chords. Crossing minimization in circular layouts is \NP-hard. One way to allow for fewer crossings in practice are…
We introduce a decomposition method for the distributed calculation of exact Euclidean Minimum Spanning Trees in high dimensions (where sub-quadratic algorithms are not effective), or more generalized geometric-minimum spanning trees of…
The paper addresses large-scale, convex optimization problems that need to be solved in a distributed way by agents communicating according to a random time-varying graph. Specifically, the goal of the network is to minimize the sum of…
We study the problem of robustly reconnecting habitats via the placement of green bridges at minimum total cost. Habitats are fragmented into patches and we seek to reconnect each habitat such that it remains connected even if any of its…
A matching cut of a graph is a partition of its vertex set in two such that no vertex has more than one neighbor across the cut. The Matching Cut problem asks if a graph has a matching cut. This problem, and its generalization d-cut, has…
Path cover is a well-known intractable problem that finds a minimum number of vertex disjoint paths in a given graph to cover all the vertices. We show that a variant, where the objective function is not the number of paths but the number…
A vertex set $U \subseteq V$ of an undirected graph $G=(V,E)$ is a $\textit{resolving set}$ for $G$, if for every two distinct vertices $u,v \in V$ there is a vertex $w \in U$ such that the distances between $u$ and $w$ and the distance…
The 2-Vertex-Connected Spanning Subgraph problem (2VCSS) is among the most basic NP-hard (Survivable) Network Design problems: we are given an (unweighted) undirected graph $G$. Our goal is to find a spanning subgraph $S$ of $G$ with the…
Motivated by performance optimization of large-scale graph processing systems that distribute the graph across multiple machines, we consider the balanced graph partitioning problem. Compared to the previous work, we study the…
Sorting by reversals is an important problem in inferring the evolutionary relationship between two genomes. The problem of sorting unsigned permutation has been proven to be NP-hard. The best guaranteed error bounded is the 3/2-…
The $k$-cut problem asks, given a connected graph $G$ and a positive integer $k$, to find a minimum-weight set of edges whose removal splits $G$ into $k$ connected components. We give the first polynomial-time algorithm with approximation…
We significantly improve known time bounds for solving the minimum cut problem on undirected graphs. We use a ``semi-duality'' between minimum cuts and maximum spanning tree packings combined with our previously developed random sampling…
The minimum $s$-$t$ cut problem in graphs is one of the most fundamental problems in combinatorial optimization, and graph cuts underlie algorithms throughout discrete mathematics, theoretical computer science, operations research, and data…
In the problem (Unweighted) Max-Cut we are given a graph $G = (V,E)$ and asked for a set $S \subseteq V$ such that the number of edges from $S$ to $V \setminus S$ is maximal. In this paper we consider an even harder problem: (Weighted)…
We study the problem of experimental design for accurately identifying the causal graph structure of a simple structural causal model (SCM), where the underlying graph may include both cycles and bidirected edges induced by latent…
Let $k$ be an integer. Two vertex $k$-colorings of a graph are \emph{adjacent} if they differ on exactly one vertex. A graph is \emph{$k$-mixing} if any proper $k$-coloring can be transformed into any other through a sequence of adjacent…
In this paper, we investigate the computational complexity of subgraph reconfiguration problems in directed graphs. More specifically, we focus on the problem of reconfiguring arborescences in a digraph, where an arborescence is a directed…
We consider the following problem: from a given set of gene families trees on a set of genomes, find a first speciation, that splits these genomes into two subsets, that minimizes the number of gene duplications that happened before this…