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Learning effective protein representations is critical in a variety of tasks in biology such as predicting protein function or structure. Existing approaches usually pretrain protein language models on a large number of unlabeled amino acid…

Machine Learning · Computer Science 2023-01-31 Zuobai Zhang , Minghao Xu , Arian Jamasb , Vijil Chenthamarakshan , Aurelie Lozano , Payel Das , Jian Tang

Deep generative models have become increasingly effective at producing realistic images from randomly sampled seeds, but using such models for controllable manipulation of existing images remains challenging. We propose the Swapping…

Computer Vision and Pattern Recognition · Computer Science 2020-12-15 Taesung Park , Jun-Yan Zhu , Oliver Wang , Jingwan Lu , Eli Shechtman , Alexei A. Efros , Richard Zhang

Cartesian Genetic Programming has traditionally been using mutation as its main and often sole genetic operator to drive evolutionary search. Despite advancements in recent years, recombinationbased approaches have long been avoided, due to…

Neural and Evolutionary Computing · Computer Science 2026-05-28 Duy Long Tran , Anja Jankovic , Marie Anastacio , Holger Hoos , Roman Kalkreuth

Hyperparameter optimization is a challenging problem in developing deep neural networks. Decision of transfer layers and trainable layers is a major task for design of the transfer convolutional neural networks (CNN). Conventional transfer…

Neural and Evolutionary Computing · Computer Science 2021-03-08 Chen Li , JinZhe Jiang , YaQian Zhao , RenGang Li , EnDong Wang , Xin Zhang , Kun Zhao

Graph generation is a critical task in numerous domains, including molecular design and social network analysis, due to its ability to model complex relationships and structured data. While most modern graph generative models utilize…

Machine Learning · Computer Science 2025-06-04 Xiaohui Chen , Yinkai Wang , Jiaxing He , Yuanqi Du , Soha Hassoun , Xiaolin Xu , Li-Ping Liu

Genetic algorithms, computer programs that simulate natural evolution, are increasingly applied across many disciplines. They have been used to solve various optimisation problems from neural network architecture search to strategic games,…

Neural and Evolutionary Computing · Computer Science 2021-09-14 Aymeric Vie , Alissa M. Kleinnijenhuis , Doyne J. Farmer

Geometric and Topological Deep Learning are rapidly growing research areas that enhance machine learning through the use of geometric and topological structures. Within this framework, Group Equivariant Non-Expansive Operators (GENEOs) have…

Representation Theory · Mathematics 2026-01-14 Francesco Conti , Patrizio Frosini , Nicola Quercioli

Deep Gaussian processes (DGPs) are multi-layer hierarchical generalisations of Gaussian processes (GPs) and are formally equivalent to neural networks with multiple, infinitely wide hidden layers. DGPs are probabilistic and non-parametric…

We provide a novel approach to construct generative models for graphs. Instead of using the traditional probabilistic models or deep generative models, we propose to instead find an algorithm that generates the data. We achieve this using…

Machine Learning · Computer Science 2023-04-26 Mihai Babiac , Karolis Martinkus , Roger Wattenhofer

Deep learning on graphs has become a popular research topic with many applications. However, past work has concentrated on learning graph embedding tasks, which is in contrast with advances in generative models for images and text. Is it…

Machine Learning · Computer Science 2018-02-13 Martin Simonovsky , Nikos Komodakis

Learning symbolic expressions directly from experiment data is a vital step in AI-driven scientific discovery. Nevertheless, state-of-the-art approaches are limited to learning simple expressions. Regressing expressions involving many…

Neural and Evolutionary Computing · Computer Science 2023-06-16 Nan Jiang , Yexiang Xue

This paper enhances image-GPT (iGPT), one of the pioneering works that introduce autoregressive pretraining to predict the next pixels for visual representation learning. Two simple yet essential changes are made. First, we shift the…

Computer Vision and Pattern Recognition · Computer Science 2024-07-08 Sucheng Ren , Zeyu Wang , Hongru Zhu , Junfei Xiao , Alan Yuille , Cihang Xie

Intelligent Object manipulation for grasping is a challenging problem for robots. Unlike robots, humans almost immediately know how to manipulate objects for grasping due to learning over the years. A grown woman can grasp objects more…

Machine Learning · Computer Science 2020-01-16 Priya Shukla , Hitesh Kumar , G. C. Nandi

Deep Neural Networks have shown tremendous success in the area of object recognition, image classification and natural language processing. However, designing optimal Neural Network architectures that can learn and output arbitrary graphs…

Machine Learning · Computer Science 2019-07-02 Mital Kinderkhedia

In evolutionary policy search, neural networks are usually represented using a direct mapping: each gene encodes one network weight. Indirect encoding methods, where each gene can encode for multiple weights, shorten the genome to reduce…

Neural and Evolutionary Computing · Computer Science 2024-12-13 Tarek Kunze , Paul Templier , Dennis G Wilson

The study of the classifier's design and it's usage is one of the most important machine learning areas. With the development of automatic machine learning methods, various approaches are used to build a robust classifier model. Due to some…

Machine Learning · Computer Science 2021-01-22 Ivan Gridin

Cartesian Genetic Programming (CGP) has many modifications across a variety of implementations, such as recursive connections and node weights. Alternative genetic operators have also been proposed for CGP, but have not been fully studied.…

Neural and Evolutionary Computing · Computer Science 2018-10-10 DG Wilson , Julian F. Miller , Sylvain Cussat-Blanc , Hervé Luga

Deep Gaussian Processes (DGPs) are multi-layer, flexible extensions of Gaussian processes but their training remains challenging. Sparse approximations simplify the training but often require optimization over a large number of inducing…

Machine Learning · Statistics 2021-07-20 Ayush Jain , P. K. Srijith , Mohammad Emtiyaz Khan

Genetic algorithms have been widely used in many practical optimization problems. Inspired by natural selection, operators, including mutation, crossover and selection, provide effective heuristics for search and black-box optimization.…

Machine Learning · Statistics 2018-03-14 Tanmay Gangwani , Jian Peng

Gaussian process (GP) models provide a powerful tool for prediction but are computationally prohibitive using large data sets. In such scenarios, one has to resort to approximate methods. We derive an approximation based on a composite…

Machine Learning · Statistics 2018-02-02 Xiuming Liu , Dave Zachariah , Edith C. H. Ngai
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