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Related papers: Integrated Tools for Engineering Ontologies

200 papers

The Gene Ontology (GO) project is the largest resource for cataloguing gene function. The combination of solid conceptual underpinnings and a practical set of features have made the GO a widely adopted resource in the research community and…

Genomics · Quantitative Biology 2016-12-07 Pascale Gaudet , Nives Škunca , James C. Hu , Christophe Dessimoz

Tools constitute an essential contribution to natural language processing for requirements engineering (NLP4RE) research. They are executable instruments that make research usable and applicable in practice. In this chapter, we first…

Software Engineering · Computer Science 2024-03-12 Julian Frattini , Michael Unterkalmsteiner , Davide Fucci , Daniel Mendez

We present a statistical mechanical theory of the process of annotating an object with terms selected from an ontology. The term selection process is formulated as an ideal lattice gas model, but in a highly structured inhomogeneous field.…

Physics and Society · Physics 2016-05-19 David C. Hoyle , Andrew Brass

Semantic annotation, the process of identifying key-phrases in texts and linking them to concepts in a knowledge base, is an important basis for semantic information retrieval and the Semantic Web uptake. Despite the emergence of semantic…

Computation and Language · Computer Science 2018-11-15 Gagnon Michel , Zouaq Amal , Aranha Francisco , Ensan Faezeh , Jean-Louis Ludovic

Contemporary techniques in biology produce readouts for large numbers of genes simultaneously, the typical example being differential gene expression measurements. Moreover, those genes are often richly annotated using GO terms that…

Genomics · Quantitative Biology 2016-02-24 Fran Supek , Nives Škunca

Research on algorithms has drastically increased in recent years. Various sub-disciplines of computer science investigate algorithms according to different objectives and standards. This plurality of the field has led to various…

Data Structures and Algorithms · Computer Science 2025-09-17 Jan Mendling , Henrik Leopold , Henning Meyerhenke , Benoît Depaire

Four diverse tools built on the Annotation Graph Toolkit are described. Each tool associates linguistic codes and structures with time-series data. All are based on the same software library and tool architecture. TableTrans is for…

Computation and Language · Computer Science 2007-05-23 Steven Bird , Kazuaki Maeda , Xiaoyi Ma , Haejoong Lee , Beth Randall , Salim Zayat

This article presents a state-of-the-art review of recent advances aimed at transforming traditional Failure Mode and Effects Analysis (FMEA) into a more intelligent, data-driven, and semantically enriched process. As engineered systems…

Artificial Intelligence · Computer Science 2025-11-25 Haytham Younus , Sohag Kabir , Felician Campean , Pascal Bonnaud , David Delaux

We present a free and open-source tool for creating web-based surveys that include text annotation tasks. Existing tools offer either text annotation or survey functionality but not both. Combining the two input types is particularly…

Computation and Language · Computer Science 2021-12-20 Timo Spinde , Kanishka Sinha , Norman Meuschke , Bela Gipp

Many annotation tools have been developed, covering a wide variety of tasks and providing features like user management, pre-processing, and automatic labeling. However, all of these tools use Graphical User Interfaces, and often require…

Computation and Language · Computer Science 2020-06-05 Jonathan K. Kummerfeld

This paper addresses issues in automated treebank construction. We show how standard part-of-speech tagging techniques extend to the more general problem of structural annotation, especially for determining grammatical functions and…

cmp-lg · Computer Science 2008-02-03 Thorsten Brants , Wojciech Skut , Brigitte Krenn

In a context of constant evolution and proliferation of AI technology,Hybrid Intelligence is gaining popularity to refer a balanced coexistence between human and artificial intelligence. The term has been extensively used in the past two…

Artificial Intelligence · Computer Science 2024-07-30 Salvatore F. Pileggi

Large Language Models (LLMs) have emerged as powerful support tools across various natural language tasks and a range of application domains. Recent studies focus on exploring their capabilities for data annotation. This paper provides a…

Computation and Language · Computer Science 2025-07-01 Maja Pavlovic , Massimo Poesio

Large Language Models bear the promise of significant acceleration of key Knowledge Graph and Ontology Engineering tasks, including ontology modeling, extension, modification, population, alignment, as well as entity disambiguation. We lay…

Artificial Intelligence · Computer Science 2024-11-15 Cogan Shimizu , Pascal Hitzler

The semantic technologies pose new challenge for the way in which we built and operate systems. They are tools used to represent significances, associations, theories, separated from data and code. Their goal is to create, to discover, to…

Software Engineering · Computer Science 2009-03-26 Ioan Despi , Lucian Luca

The application of semantic technologies to content on the web is, in many regards, important and urgent. Search engines, chatbots, intelligent personal assistants and other technologies increasingly rely on content published as semantic…

Information Retrieval · Computer Science 2017-10-03 Elias Kärle , Umutcan Şimşek , Dieter Fensel

The annotation of image and video data of large datasets is a fundamental task in multimedia information retrieval and computer vision applications. In order to support the users during the image and video annotation process, several…

Computer Vision and Pattern Recognition · Computer Science 2015-02-19 Gianluigi Ciocca , Paolo Napoletano , Raimondo Schettini

The field of engineering is shaped by the tools and methods used to solve problems. Optimization is one such class of powerful, robust, and effective engineering tools proven over decades of use. Within just a few years, generative…

Computational Engineering, Finance, and Science · Computer Science 2025-12-02 Lyle Regenwetter , Cyril Picard , Amin Heyrani Nobari , Akash Srivastava , Faez Ahmed

I present a tool which tells the quality of document or its usefulness based on annotations. Annotation may include comments, notes, observation, highlights, underline, explanation, question or help etc. comments are used for evaluative…

Information Retrieval · Computer Science 2011-11-08 Archana Shukla

The use of Semantic Technologies - in particular the Semantic Web - has revealed to be a great tool for describing the cultural heritage domain and artistic practices. However, the panorama of ontologies for musicological applications seems…

Sound · Computer Science 2023-03-31 Andrea Poltronieri , Aldo Gangemi