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We revisit classic string problems considered in the area of parameterized complexity, and study them through the lens of dynamic data structures. That is, instead of asking for a static algorithm that solves the given instance efficiently,…

Data Structures and Algorithms · Computer Science 2022-05-03 Jędrzej Olkowski , Michał Pilipczuk , Mateusz Rychlicki , Karol Węgrzycki , Anna Zych-Pawlewicz

In this note, we consider the complexity of maintaining the longest increasing subsequence (LIS) of an array under (i) inserting an element, and (ii) deleting an element of an array. We show that no algorithm can support queries and updates…

Data Structures and Algorithms · Computer Science 2021-02-24 Paweł Gawrychowski , Wojciech Janczewski

The text-to-pattern Hamming distances problem asks to compute the Hamming distances between a given pattern of length $m$ and all length-$m$ substrings of a given text of length $n\ge m$. We focus on the $k$-mismatch version of the problem,…

Data Structures and Algorithms · Computer Science 2022-03-30 Raphaël Clifford , Paweł Gawrychowski , Tomasz Kociumaka , Daniel P. Martin , Przemysław Uznański

A dynamic graph algorithm is a data structure that answers queries about a property of the current graph while supporting graph modifications such as edge insertions and deletions. Prior work has shown strong conditional lower bounds for…

Data Structures and Algorithms · Computer Science 2023-01-30 Monika Henzinger , Ami Paz , A. R. Sricharan

We consider string matching with variable length gaps. Given a string $T$ and a pattern $P$ consisting of strings separated by variable length gaps (arbitrary strings of length in a specified range), the problem is to find all ending…

Data Structures and Algorithms · Computer Science 2011-10-14 Philip Bille , Inge Li Goertz , Hjalte Wedel Vildhøj , David Kofoed Wind

In this paper, we present and study the \emph{Hamming distance oracle problem}. In this problem, the task is to preprocess two strings $S$ and $T$ of lengths $n$ and $m$, respectively, to obtain a data-structure that is able to answer…

Data Structures and Algorithms · Computer Science 2024-07-09 Itai Boneh , Dvir Fried , Shay Golan , Matan Kraus

Upper bounds on the maximum number of codewords in a binary code of a given length and minimum Hamming distance are considered. New bounds are derived by a combination of linear programming and counting arguments. Some of these bounds…

Information Theory · Computer Science 2007-07-13 Beniamin Mounits , Tuvi Etzion , Simon Litsyn

We present space lower bounds for online pattern matching under a number of different distance measures. Given a pattern of length m and a text that arrives one character at a time, the online pattern matching problem is to report the…

Data Structures and Algorithms · Computer Science 2011-06-23 Raphael Clifford , Markus Jalsenius , Ely Porat , Benjamin Sach

{\em Algorithms with predictions} incorporate machine learning predictions into algorithm design. A plethora of recent works incorporated predictions to improve on worst-case optimal bounds for online problems. In this paper, we initiate…

Data Structures and Algorithms · Computer Science 2023-09-12 Monika Henzinger , Barna Saha , Martin P. Seybold , Christopher Ye

We study data structure problems related to document indexing and pattern matching queries and our main contribution is to show that the pointer machine model of computation can be extremely useful in proving high and unconditional lower…

Data Structures and Algorithms · Computer Science 2016-04-22 Peyman Afshani , Jesper Sindahl Nielsen

In a dynamic data structure problem we wish to maintain an encoding of some data in memory, in such a way that we may efficiently carry out a sequence of queries and updates to the data. A long-standing open problem in this area is to prove…

Computational Complexity · Computer Science 2020-10-05 Pavel Dvořák , Bruno Loff

We prove essentially optimal fine-grained lower bounds on the gap between a data structure and a partially retroactive version of the same data structure. Precisely, assuming any one of three standard conjectures, we describe a problem that…

Data Structures and Algorithms · Computer Science 2022-11-29 Lily Chung , Erik D. Demaine , Dylan Hendrickson , Jayson Lynch

Given two strings $S$ and $P$, the Episode Matching problem is to find the shortest substring of $S$ that contains $P$ as a subsequence. The best known upper bound for this problem is $\tilde O(nm)$ by Das et al. (1997) , where $n,m$ are…

Data Structures and Algorithms · Computer Science 2024-02-15 Philip Bille , Inge Li Gørtz , Shay Mozes , Teresa Anna Steiner , Oren Weimann

In recent years it has become popular to study dynamic problems in a sensitivity setting: Instead of allowing for an arbitrary sequence of updates, the sensitivity model only allows to apply batch updates of small size to the original input…

Data Structures and Algorithms · Computer Science 2017-03-07 Monika Henzinger , Andrea Lincoln , Stefan Neumann , Virginia Vassilevska Williams

In this paper we study lower bounds for the fundamental problem of text indexing with mismatches and differences. In this problem we are given a long string of length $n$, the "text", and the task is to preprocess it into a data structure…

Data Structures and Algorithms · Computer Science 2018-12-24 Vincent Cohen-Addad , Laurent Feuilloley , Tatiana Starikovskaya

Traditional orthogonal range problems allow queries over a static set of points, each with some value. Dynamic variants allow points to be added or removed, one at a time. To support more powerful updates, we introduce the Grid Range class…

Data Structures and Algorithms · Computer Science 2021-01-07 Joshua Lau , Angus Ritossa

Conditional lower bounds for dynamic graph problems has received a great deal of attention in recent years. While many results are now known for the fully-dynamic case and such bounds often imply worst-case bounds for the partially dynamic…

Data Structures and Algorithms · Computer Science 2016-05-04 Søren Dahlgaard

We study the fully dynamic pattern matching problem where the pattern may contain up to kwildcard symbols, each matching any symbol of the alphabet. Both the text and the pattern are subject to updates (insert, delete, change). We design an…

Data Structures and Algorithms · Computer Science 2026-01-23 Arshia Ataee Naeini , Amir-Parsa Mobed , Masoud Seddighin , Saeed Seddighin

In this paper, we study the static cell probe complexity of non-adaptive data structures that maintain a subset of $n$ points from a universe consisting of $m=n^{1+\Omega(1)}$ points. A data structure is defined to be non-adaptive when the…

Data Structures and Algorithms · Computer Science 2024-04-19 Giuseppe Persiano , Kevin Yeo

The problem of approximate string matching is important in many different areas such as computational biology, text processing and pattern recognition. A great effort has been made to design efficient algorithms addressing several variants…

Data Structures and Algorithms · Computer Science 2008-07-29 Dimitris Papamichail , Georgios Papamichail
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