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Graph kernels have recently emerged as a promising approach for tackling the graph similarity and learning tasks at the same time. In this paper, we propose a general framework for designing graph kernels. The proposed framework capitalizes…

Machine Learning · Statistics 2018-08-09 Giannis Nikolentzos , Michalis Vazirgiannis

Graph drawings are commonly used to visualize relational data. User understanding and performance are linked to the quality of such drawings, which is measured by quality metrics. The tacit knowledge in the graph drawing community about…

Computational Geometry · Computer Science 2025-08-22 Simon van Wageningen , Tamara Mchedlidze , Alexandru C. Telea

The recent theory of graph limits gives a powerful framework for understanding the properties of suitable (convergent) sequences $(G_n)$ of graphs in terms of a limiting object which may be represented by a symmetric function $W$ on…

Combinatorics · Mathematics 2012-08-21 Bela Bollobas , Svante Janson , Oliver Riordan

This paper is about similarity between objects that can be represented as points in metric measure spaces. A metric measure space is a metric space that is also equipped with a measure. For example, a network with distances between its…

Discrete Mathematics · Computer Science 2020-11-03 Evgeny Dantsin , Alexander Wolpert

Large-scale graphs are widely used to represent object relationships in many real world applications. The occurrence of large-scale graphs presents significant computational challenges to process, analyze, and extract information. Graph…

Social and Information Networks · Computer Science 2019-10-11 Yu Jin , Andreas Loukas , Joseph F. JaJa

We discuss the problem of extending data mining approaches to cases in which data points arise in the form of individual graphs. Being able to find the intrinsic low-dimensionality in ensembles of graphs can be useful in a variety of…

Data Analysis, Statistics and Probability · Physics 2013-06-18 Karthikeyan Rajendran , Ioannis G. Kevrekidis

Distance-based tests, also called "energy statistics", are leading methods for two-sample and independence tests from the statistics community. Kernel-based tests, developed from "kernel mean embeddings", are leading methods for two-sample…

Machine Learning · Statistics 2024-06-27 Cencheng Shen , Joshua T. Vogelstein

Many community detection algorithms require the introduction of a measure on the set of nodes. Previously, a lot of efforts have been made to find the top-performing measures. In most cases, experiments were conducted on several datasets or…

Social and Information Networks · Computer Science 2021-11-03 Rinat Aynulin

The availability of graph data with node attributes that can be either discrete or real-valued is constantly increasing. While existing kernel methods are effective techniques for dealing with graphs having discrete node labels, their…

Machine Learning · Computer Science 2024-10-30 Giovanni Da San Martino , Nicolò Navarin , Alessandro Sperduti

We propose graph kernels based on subgraph matchings, i.e. structure-preserving bijections between subgraphs. While recently proposed kernels based on common subgraphs (Wale et al., 2008; Shervashidze et al., 2009) in general can not be…

Machine Learning · Computer Science 2012-07-03 Nils Kriege , Petra Mutzel

Intuitively, the concept of similarity is the notion to measure an inexact matching between two entities of the same reference set. The notions of similarity and its close relative dissimilarity are widely used in many fields of Artificial…

Artificial Intelligence · Computer Science 2012-12-13 Lluís A. Belanche

Network robustness research aims at finding a measure to quantify network robustness. Once such a measure has been established, we will be able to compare networks, to improve existing networks and to design new networks that are able to…

Discrete Mathematics · Computer Science 2013-11-21 W. Ellens , R. E. Kooij

Measure the similarity of the nodes in the complex networks have interested many researchers to explore it. In this paper, a new method which is based on the degree centrality and the Relative-entropy is proposed to measure the similarity…

Social and Information Networks · Computer Science 2015-02-04 Qi Zhang , Meizhu Li , Yong Deng , Sankaran Mahadevan

A fundamental problem on graph-structured data is that of quantifying similarity between graphs. Graph kernels are an established technique for such tasks; in particular, those based on random walks and return probabilities have proven to…

Machine Learning · Computer Science 2021-01-21 Leo Huang , Andrew Graven , David Bindel

Many functions have been recently defined to assess the similarity among networks as tools for quantitative comparison. They stem from very different frameworks - and they are tuned for dealing with different situations. Here we show an…

Molecular Networks · Quantitative Biology 2012-08-21 Giuseppe Jurman , Roberto Visintainer , Cesare Furlanello

Graph kernels are widely used for measuring the similarity between graphs. Many existing graph kernels, which focus on local patterns within graphs rather than their global properties, suffer from significant structure information loss when…

Machine Learning · Computer Science 2019-12-02 Lingfei Wu , Ian En-Hsu Yen , Zhen Zhang , Kun Xu , Liang Zhao , Xi Peng , Yinglong Xia , Charu Aggarwal

We present in this work a new family of kernels to compare positive measures on arbitrary spaces $\Xcal$ endowed with a positive kernel $\kappa$, which translates naturally into kernels between histograms or clouds of points. We first cover…

Machine Learning · Statistics 2009-09-08 Marco Cuturi

Graph-level representations are crucial tools for characterising structural differences between graphs. However, comparing graphs with different cardinalities, even when sampled from the same underlying distribution, remains challenging.…

Machine Learning · Computer Science 2026-05-08 Katharina Limbeck , Nadja Häusermann , Martin Carrasco , Guy Wolf , Bastian Rieck

The aim of the present work is a comparative study of different persistence kernels applied to various classification problems. After some necessary preliminaries on homology and persistence diagrams, we introduce five different kernels…

Machine Learning · Computer Science 2024-08-15 Cinzia Bandiziol , Stefano De Marchi

We introduce GSimCNN (Graph Similarity Computation via Convolutional Neural Networks) for predicting the similarity score between two graphs. As the core operation of graph similarity search, pairwise graph similarity computation is a…

Machine Learning · Computer Science 2018-11-15 Yunsheng Bai , Hao Ding , Yizhou Sun , Wei Wang