Related papers: Hamiltonian dynamics and distributed chaos in DNA
The macromolecules that encode and translate information in living systems, DNA and RNA, exhibit distinctive structural asymmetries, including homochirality or mirror image asymmetry and $3' - 5'$ directionality, that are invariant across…
Various physical systems relax mechanical frustration through configurational rearrangements. We examine such rearrangements via Hamiltonian dynamics of simple internally-stressed harmonic 4-mass systems. We demonstrate theoretically and…
The denaturation of the double helix is a template for fundamental biological functions such as replication and transcription involving the formation of local fluctuational openings. The denaturation transition is studied for heterogeneous…
The authors review the evidence for the applicability of random--matrix theory to nuclear spectra. In analogy to systems with few degrees of freedom, one speaks of chaos (more accurately: quantum chaos) in nuclei whenever random--matrix…
Continuous periodogram power spectral analyses of fractal fluctuations of frequency distributions of bases A, C, G, T in Drosophila DNA show that the power spectra follow the universal inverse power-law form of the statistical normal…
We study the effects of the sequence on the propagation of nonlinear excitations in simple models of DNA, and how those effects are modified by noise. Starting from previous results on soliton dynamics on lattices defined by aperiodic…
The striking fractal geometry of strange attractors underscores the generative nature of chaos: like probability distributions, chaotic systems can be repeatedly measured to produce arbitrarily-detailed information about the underlying…
We study signatures of quantum chaos in (1+1)D Quantum Field Theory (QFT) models. Our analysis is based on the method of Hamiltonian truncation, a numerical approach for the construction of low-energy spectra and eigenstates of QFTs that…
Anomalous non-exponential relaxation in hydrated biomolecules is commonly attributed to the complexity of the free-energy landscapes, similarly to polymers and glasses. It was found recently that the hydrogen-bond breathing of terminal DNA…
We review the occurrence of the patterns of the onset of chaos in low-dimensional nonlinear dissipative systems in leading topics of condensed matter physics and complex systems of various disciplines. We consider the dynamics associated…
We study spectral form factor in periodically-kicked bosonic chains. We consider a family of models where a Hamiltonian with the terms diagonal in the Fock space basis, including random chemical potentials and pair-wise interactions, is…
We demonstrate that both kinds of the Hamiltonian intermittency exert an influence on the disruption statistics in the equal mass three-body problem. Studying initially-resting triple systems we found a narrow region in the vicinity of the…
Collective chaos is shown to emerge, via a period-doubling cascade, from quasiperiodic partial synchronization in a population of identical inhibitory neurons with delayed global coupling. This system is thoroughly investigated by means of…
We consider the chaotic dynamics of the interaction between an ensemble of two-level atoms in a high-Q Fabry-Perot cavity with a single mode of self-consistent field and with an external amplitude-modulated field. It is shown that in the…
We investigate dynamically and statistically diffusive motion in a chain of linearly coupled 2-dimensional symplectic McMillan maps and find evidence of subdiffusion in weakly and strongly chaotic regimes when all maps of the chain possess…
Recruitment dynamics, or the distribution of the number of offspring among individuals, is central for understanding ecology and evolution. Sweepstakes reproduction (heavy right-tailed offspring number distribution) is central for…
The imaginary time path integral formalism is applied to a nonlinear Hamiltonian for a short fragment of heterogeneous DNA with a stabilizing solvent interaction term. Torsional effects are modeled by a twist angle between neighboring base…
Statistical aspects of the dynamics of chaotic scattering in the classical model of $\alpha$-cluster nuclei are studied. It is found that the dynamics governed by hyperbolic instabilities which results in an exponential decay of the…
Bacterial chromosome replication occurs in the absence of a canonical spindle apparatus; yet it reliably produces organised and segregated genomes. While both passive and active mechanisms have been investigated, DNA replication itself is a…
Scrambling in interacting quantum systems out of equilibrium is particularly effective in the chaotic regime. Under time evolution, initially localized information is said to be scrambled as it spreads throughout the entire system. This…