Related papers: Hierarchical Overlap Graph
Graph Neural Networks (GNNs) have become a prominent approach to machine learning with graphs and have been increasingly applied in a multitude of domains. Nevertheless, since most existing GNN models are based on flat message-passing…
A sparsifier of a graph $G$ (Bencz\'ur and Karger; Spielman and Teng) is a sparse weighted subgraph $\tilde G$ that approximately retains the cut structure of $G$. For general graphs, non-trivial sparsification is possible only by using…
The MEG (minimum equivalent graph) problem is, given a directed graph, to find a small subset of the edges that maintains all reachability relations between nodes. The problem is NP-hard. This paper gives a proof that, for graphs where each…
We give an algorithm for finding the arboricity of a weighted, undirected graph, defined as the minimum number of spanning forests that cover all edges of the graph, in $\sqrt{n} m^{1+o(1)}$ time. This improves on the previous best bound of…
The notion of vertex sparsification is introduced in \cite{M}, where it was shown that for any graph $G = (V, E)$ and a subset of $k$ terminals $K \subset V$, there is a polynomial time algorithm to construct a graph $H = (K, E_H)$ on just…
We give alternative definitions for maximum matching width, e.g. a graph $G$ has $\operatorname{mmw}(G) \leq k$ if and only if it is a subgraph of a chordal graph $H$ and for every maximal clique $X$ of $H$ there exists $A,B,C \subseteq X$…
The atom graph of a graph is the graph whose vertices are the atoms obtained by clique minimal separator decomposition of this graph, and whose edges are the edges of all possible atom trees of this graph. We provide two efficient…
It is known that many networks modeling real-life complex systems are small-word (large local clustering and small diameter) and scale-free (power law of the degree distribution), and very often they are also hierarchical. Although most of…
Drug synergy prediction (DSP) aims to identify efficacious drug combinations under various cellular contexts with different targets. However, the continual emergence of novel compounds results in variations in molecular scaffolds and sizes,…
Covering alignment problems arise from recent developments in genomics; so called pan-genome graphs are replacing reference genomes, and advances in haplotyping enable full content of diploid genomes to be used as basis of sequence…
Hypergraph visualization has many applications in network data analysis. Recently, a polygon-based representation for hypergraphs has been proposed with demonstrated benefits. However, the polygon-based layout often suffers from excessive…
This paper considers fully dynamic graph algorithms with both faster worst case update time and sublinear space. The fully dynamic graph connectivity problem is the following: given a graph on a fixed set of n nodes, process an online…
Motivated by extracting and summarizing relevant information in short sentence settings, such as satisfaction questionnaires, hotel reviews, and X/Twitter, we study the problem of clustering words in a hierarchical fashion. In particular,…
A temporal graph is a sequence of graphs (called layers) over the same vertex set -- describing a graph topology which is subject to discrete changes over time. A $\Delta$-temporal matching $M$ is a set of time edges $(e,t)$ (an edge $e$…
In this paper we present a really simple linear-time algorithm constructing a context-free grammar of size O(g log (N/g)) for the input string, where N is the size of the input string and g the size of the optimal grammar generating this…
Graph G is the square of graph H if two vertices x, y have an edge in G if and only if x, y are of distance at most two in H. Given H it is easy to compute its square H2, however Motwani and Sudan proved that it is NP-complete to determine…
Given two convex polygons $P$ and $Q$ with $n$ and $m$ edges, the maximum overlap problem is to find a translation of $P$ that maximizes the area of its intersection with $Q$. We give the first randomized algorithm for this problem with…
Retrieval-augmented generation (RAG) is a powerful technique that enhances downstream task execution by retrieving additional information, such as knowledge, skills, and tools from external sources. Graph, by its intrinsic "nodes connected…
In keyword search over a data graph, an answer is a non-redundant subtree that contains all the keywords of the query. A naive approach to producing all the answers by increasing height is to generalize Dijkstra's algorithm to enumerating…
It is known that context-free grammars can be extended to generating graphs resulting in graph grammars; one of such fundamental approaches is hyperedge replacement grammars. On the other hand there are type-logical grammars which also…