Related papers: Generalized Fitch Graphs: Edge-labeled Graphs that…
The sets of vertices and edges of an undirected, simple, finite, connected graph $G$ are denoted by $V(G)$ and $E(G)$, respectively. An arbitrary nonempty finite subset of consecutive integers is called an interval. An injective mapping…
A graph $G$ is said to be \textit{determined by its generalized spectrum} (DGS for short) if for any graph $H$, $H$ and $G$ are cospectral with cospectral complements implies that $H$ is isomorphic to $G$. In \cite{WX,WX1}, Wang and Xu gave…
Background: Tree reconciliation problems have long been studied in phylogenetics. A particular variant of the reconciliation problem for a gene tree T and a species tree S assumes that for each interior vertex x of T it is known whether x…
A graph is a powerful concept for representation of relations between pairs of entities. Data with underlying graph structure can be found across many disciplines and there is a natural desire for understanding such data better. Deep…
In the absence of horizontal gene transfer it is possible to reconstruct the history of gene families from empirically determined orthology relations, which are equivalent to event-labeled gene trees. Knowledge of the event labels…
We propose a fast methodology for encoding graphs with information-theoretically minimum numbers of bits. Specifically, a graph with property pi is called a pi-graph. If pi satisfies certain properties, then an n-node m-edge pi-graph G can…
A split graph is a graph whose vertices can be partitioned into a clique and a stable set. We investigate the combinatorial species of split graphs, providing species-theoretic generalizations of enumerative results due to B\'ina and…
The simplex graph $S(G)$ of a graph $G$ is defined as the graph whose vertices are the cliques of $G$ (including the empty set), with two vertices being adjacent if, as cliques of $G$, they differ in exactly one vertex. Simplex graphs form…
Let $G$ be a graph. Its laplacian matrix $L(G)$ is positive and we consider eigenvectors of its first non-null eigenvalue that are called Fiedler vector. They have been intensively used in spectral partitioning problems due to their good…
The vertices of a $k$-token graph of a graph $G$ correspond to $k$ indistinguishable tokens placed on $k$ different vertices of $G$. Changing some conditions on both the nature of the tokens and the number of tokens allowed in each vertex…
Generalized splines are an algebraic combinatorial framework that generalizes and unifies various established concepts across different fields, most notably the classical notion of splines and the topological notion of GKM theory. The…
In the branch of mathematics known as graph theory, graphs are considered as a set of points, called vertices, with connections between these points, called edges. The purpose of this paper is to study mappings between two graphs that have…
We introduce a method to embed edge-colored graphs into families of expander graphs, which generalizes a framework developed by Dragani\'c, Krivelevich, and Nenadov (2022). As an application, we show that each family of sufficiently…
In the literature, the notion of discrepancy is used in several contexts, even in the theory of graphs. Here, for a graph $G$, $\{-1, 1\}$ labels are assigned to the edges, and we consider a family $\mathcal{S}_G$ of (spanning) subgraphs of…
Let $G$ be a molecular graph. The total-eccentricity index of graph $G$ is defined as the sum of eccentricities of all vertices of $G$. %In [R. Farooq, M.A. Malik, J. Rada, Extremal graphs with respect to total-eccentricity index, 2017,…
Weighted graphs are ubiquitous throughout biology, chemistry, and the social sciences, motivating the development of generative models for abstract weighted graph data using deep neural networks. However, most current deep generative models…
Let $G$ be a graph with vertex set $V(G)$ and edge set $E(G)$, and $f$ be a 0-1 labeling of $E(G)$ so that the absolute difference in the number of edges labeled 1 and 0 is no more than one. Call such a labeling $f$ \emph{edge-friendly}.…
We introduce the \emph{ID-index} of a finite simple connected graph. For a graph $G=(V,\ E)$ with diameter $d$, we let $f:V\longrightarrow \mathbb{R}$ assign \emph{ranks} to the vertices, then under $f$, each vertex $v$ gets a…
Given a finite vector space $V=\mathbb{F}_q^n$, the $q$-analogue of a graph, called a $q$-graph, is a pair $\Gamma=(\mathcal{V},\mathcal{E})$, where $\mathcal{V}$ is the set of $1$-dimensional subspaces of $V$ and $\mathcal{E}$ is a subset…
A temporal graph is a graph whose edges appear at certain points in time. These graphs are temporally connected (in class TC) if all vertices can reach each other by temporal paths (traversing the edges in chronological order). Reachability…