Related papers: Generalized Fitch Graphs: Edge-labeled Graphs that…
We unify several seemingly different graph and digraph classes under one umbrella. These classes are all broadly speaking different generalizations of interval graphs, and include, in addition to interval graphs, also adjusted interval…
In 1985, Golumbic and Scheinerman established an equivalence between comparability graphs and containment graphs, graphs whose vertices represent sets, with edges indicating set containment. A few years earlier, McMorris and Zaslavsky…
The seminal papers of Edmonds \cite{Egy}, Nash-Williams \cite{NW} and Tutte \cite{Tu} have laid the foundations of the theories of packing arborescences and packing trees. The directed version has been extensively investigated, resulting in…
Let $G$ be a group. The directed endomorphism graph, $\dend(G)$ of $G$ is a directed graph with vertex set $G$ and there is a directed edge from the vertex $a$ to the vertex $b$ if $a \neq b$ and there exists an endomorphism on $G$ mapping…
Deciding whether a collection of unrooted trees is compatible is a fundamental problem in phylogenetics. Two different graph-theoretic characterizations of tree compatibility have recently been proposed. In one of these, tree compatibility…
Phylogenetic networks which are, as opposed to trees, suitable to describe processes like hybridization and horizontal gene transfer, play a substantial role in evolutionary research. However, while non-treelike events need to be taken into…
Let $G$ be a group. The directed endomorphism graph, \dend of $G$ is a directed graph with vertex set $G$ and there is a directed edge from the vertex `$a$' to the vertex `$\, b$' $(a \neq b) $ if and only if there exists an endomorphism on…
In this paper, we introduce a generalization of graphlets to heterogeneous networks called typed graphlets. Informally, typed graphlets are small typed induced subgraphs. Typed graphlets generalize graphlets to rich heterogeneous networks…
A geometric graph is a graph drawn in the plane with vertices represented by points and edges as straight-line segments. A geometric graph contains a (k,l)-crossing family if there is a pair of edge subsets E_1,E_2 such that |E_1| = k and…
Knowledge graph embedding involves learning representations of entities -- the vertices of the graph -- and relations -- the edges of the graph -- such that the resulting representations encode the known factual information represented by…
Most genes are part of larger families of evolutionary related genes. The history of gene families typically involves duplications and losses of genes as well as horizontal transfers into other organisms. The reconstruction of detailed gene…
Let $G$ be a finite group. The solubility graph associated with the finite group $G$, denoted by $\Gamma_{\cal S}(G)$, is a simple graph whose vertices are the non-trivial elements of $G$, and there is an edge between two distinct elements…
A graph is a core or unretractive if all its endomorphisms are automorphisms. Well-known examples of cores include the Petersen graph and the graph of the dodecahedron -- both generalized Petersen graphs. We characterize the generalized…
Suppose N is a phylogenetic network indicating a complicated relationship among individuals and taxa. Often of interest is a much simpler network, for example, a species tree T, that summarizes the most fundamental relationships. The…
Phylogenetic networks are a type of leaf-labelled, acyclic, directed graph used by biologists to represent the evolutionary history of species whose past includes reticulation events. A phylogenetic network is tree-child if each non-leaf…
Digraph-defined external difference families were recently introduced as a natural generalization of several well-studied combinatorial objects motivated by cryptography (e.g. external difference families (EDFs) and circular external…
Consider a graph $G$ where each vertex is visibly labelled as a member of a distinct class, but also has a hidden binary state: wild or tame. Edges with end points in the same class are called agreement edges. Premise: an edge connecting…
Phylogenetic networks generalize phylogenetic trees, and have been introduced in order to describe evolution in the case of transfer of genetic material between coexisting species. There are many classes of phylogenetic networks, which can…
The edges surrounding a face of a map $M$ form a cycle $C$, called the boundary cycle of the face, and $C$ is often not a simple cycle. If the map $M$ is arc-transitive, then there is a cyclic subgroup of automorphisms of $M$ which leaves…
A graph $G$ is said to be the intersection of graphs $G_1,G_2,\ldots,G_k$ if $V(G)=V(G_1)=V(G_2)=\cdots=V(G_k)$ and $E(G)=E(G_1)\cap E(G_2)\cap\cdots\cap E(G_k)$. For a graph $G$, $\mathrm{dim}_{COG}(G)$ (resp. $\mathrm{dim}_{TH}(G)$)…