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The "neural code" is the way the brain characterizes, stores, and processes information. Unraveling the neural code is a key goal of mathematical neuroscience. Topology, coding theory, and, recently, commutative algebra are some the…

Commutative Algebra · Mathematics 2017-06-28 Sema Gunturkun , Jack Jeffries , Jeffrey Sun

Neural codes form an algebraic framework to study the nervous system, and understanding neural codes is a key goal of mathematical neuroscience. Neural rings and ideals are the tools connecting neuroscience and commutative algebra. In this…

Commutative Algebra · Mathematics 2025-11-25 Trung Chau

Neural ideals were introduced by Curto, Itskov, et al as an algebraic tool to study neural codes. In this paper, we use the notion of polarization introduced by G\"{u}nt\"{u}rk\"{u}n, Jeffries, and Sun to compute Betti numbers of…

Commutative Algebra · Mathematics 2026-05-26 Hugh Geller , Rebecca R. G. , Alexandra Seceleanu , Nora Youngs

Neurons in the brain represent external stimuli via neural codes. These codes often arise from stereotyped stimulus-response maps, associating to each neuron a convex receptive field. An important problem confronted by the brain is to infer…

Neurons and Cognition · Quantitative Biology 2015-02-25 Carina Curto , Vladimir Itskov , Alan Veliz-Cuba , Nora Youngs

We give intrinsic characterizations of neural rings and homomorphisms between them. Also we introduce the notion of a basic monomial code map and characterize monomial code maps as compositions of basic monomial code maps. Finally, we…

Commutative Algebra · Mathematics 2020-01-03 Katie Christensen , Hamid Kulosman

Neurons in the brain represent external stimuli via neural codes. These codes often arise from stimulus-response maps, associating to each neuron a convex receptive field. An important problem confronted by the brain is to infer properties…

Neurons and Cognition · Quantitative Biology 2014-09-10 Nora Youngs

The neural ideal of a binary code $\mathbb{C} \subseteq \mathbb{F}_2^n$ is an ideal in $\mathbb{F}_2[x_1,\ldots, x_n]$ closely related to the vanishing ideal of $\mathbb{C}$. The neural ideal, first introduced by Curto et al, provides an…

Commutative Algebra · Mathematics 2019-08-26 R. Amzi Jeffs , Mohamed Omar , Nora Youngs

A neural code $\mathcal{C}$ is a collection of binary vectors of a given length n that record the co-firing patterns of a set of neurons. Our focus is on neural codes arising from place cells, neurons that respond to geographic stimulus. In…

Neurons and Cognition · Quantitative Biology 2016-07-05 Elizabeth Gross , Nida Kazi Obatake , Nora Youngs

Neural codes are binary codes that are used for information processing and representation in the brain. In previous work, we have shown how an algebraic structure, called the {\it neural ring}, can be used to efficiently encode geometric…

Neurons and Cognition · Quantitative Biology 2019-02-14 Carina Curto , Nora Youngs

Neural ideals, originally defined in arXiv:1212.4201, give a way of translating information about the firing pattern of a set of neurons into a pseudomonomial ideal in a polynomial ring. We give a simple criterion for determining whether a…

Commutative Algebra · Mathematics 2022-09-22 Hugh Geller , R. G. Rebecca

Convex neural codes are combinatorial structures describing the intersection pattern of a collection of convex sets. Inductively pierced codes are a particularly nice subclass of neural codes introduced in the information visualization…

Combinatorics · Mathematics 2019-07-01 Caitlin Lienkaemper

For a neural code $\mathcal{C}\subseteq\mathbb{F}_2^n$, polarizing the canonical form generators of the neural ideal $J_{\mathcal{C}}$ yields a squarefree monomial ideal $\mathcal{P}(J_{\mathcal{C}})\subset k[x_1,\dots,x_n,y_1,\dots,y_n]$,…

Commutative Algebra · Mathematics 2026-02-20 Selvi Kara , Ellie Lew

A neural code on $ n $ neurons is a collection of subsets of the set $ [n]=\{1,2,\dots,n\} $. Curto et al. \cite{curto2013neural} associated a ring $\mathcal{R}_{\mathcal{C}}$ (neural ring) to a neural code $\mathcal{C}$. A special class of…

Category Theory · Mathematics 2024-03-27 Neha Gupta , Suhith K N

Neural codes are binary codes in $\{0,1\}^n$; here we focus on the ones which represent the firing patterns of a type of neurons called place cells. There is much interest in determining which neural codes can be realized by a collection of…

Neurons and Cognition · Quantitative Biology 2018-07-09 Molly Hoch , Samuel Muthiah , Nida Obatake

A major area in neuroscience research is the study of how the brain processes spatial information. Neurons in the brain represent external stimuli via neural codes. These codes often arise from stereotyped stimulus-response maps,…

Neurons and Cognition · Quantitative Biology 2016-10-03 Ethan Petersen , Nora Youngs , Ryan Kruse , Dane Miyata , Rebecca Garcia , Luis David Garcia Puente

The notion of $p_g$-ideals for normal surface singularities has been proved to be very useful. On the other hand, the core of ideals has been proved to be very important concept and also very mysterious one. However, the computation of the…

Algebraic Geometry · Mathematics 2025-12-16 Tomohiro Okuma , Kei-ichi Watanabe , Ken-ichi Yoshida

Neurons in the brain represent information in their collective activity. The fidelity of this neural population code depends on whether and how variability in the response of one neuron is shared with other neurons. Two decades of studies…

Neurons and Cognition · Quantitative Biology 2021-02-02 Rava Azeredo da Silveira , Fred Rieke

The general subject considered in this thesis is a recently discovered coding technique, polar coding, which is used to construct a class of error correction codes with unique properties. In his ground-breaking work, Ar{\i}kan proved that…

Information Theory · Computer Science 2014-12-16 Mine Alsan

A generalization of the polar coding scheme called mixed-kernels is introduced. This generalization exploits several homogeneous kernels over alphabets of different sizes. An asymptotic analysis of the proposed scheme shows that its…

Information Theory · Computer Science 2015-03-25 Noam Presman , Ofer Shapira , Simon Litsyn

Selfridge, along with Sutherland and Marr provided some of the earliest proposals for how to program computers to recognize shapes. Their emphasis on filtering for contour features, especially the orientation of boundary segments, was…

Neurons and Cognition · Quantitative Biology 2018-03-22 Ernest Greene , Yash Patel
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