Related papers: Smooth $q$-Gram, and Its Applications to Detection…
Length-$q$ substrings, or $q$-grams, can represent important characteristics of text data, and determining the frequencies of all $q$-grams contained in the data is an important problem with many applications in the field of data mining and…
We present an efficient algorithm for calculating $q$-gram frequencies on strings represented in compressed form, namely, as a straight line program (SLP). Given an SLP $\mathcal{T}$ of size $n$ that represents string $T$, the algorithm…
We present simple and efficient algorithms for calculating $q$-gram frequencies on strings represented in compressed form, namely, as a straight line program (SLP). Given an SLP of size $n$ that represents string $T$, we present an $O(qn)$…
Given a text $T$ of length $n$ and a pattern $P$ of length $m$, the string matching problem is a task to find all occurrences of $P$ in $T$. In this study, we propose an algorithm that solves this problem in $O((n + m)q)$ time considering…
Adaptive Random Testing (ART) has faced criticism, particularly for its computational inefficiency, as highlighted by Arcuri and Briand. Their analysis clarified how ART requires a quadratic number of distance computations as the number of…
Q-learning is a stochastic approximation version of the classic value iteration. The literature has established that Q-learning suffers from both maximization bias and slower convergence. Recently, multi-step algorithms have shown practical…
We consider the classical exact multiple string matching problem. Our solution is based on $q$-grams combined with pattern superimposition, bit-parallelism and alphabet size reduction. We discuss the pros and cons of the various…
String matching is the problem of finding all the occurrences of a pattern in a text. We propose improved versions of the fast family of string matching algorithms based on hashing $q$-grams. The improvement consists of considering minimal…
We consider the problem of computing the q-gram profile of a string \str of size $N$ compressed by a context-free grammar with $n$ production rules. We present an algorithm that runs in $O(N-\alpha)$ expected time and uses $O(n+q+\kq)$…
Short-depth algorithms are crucial for reducing computational error on near-term quantum computers, for which decoherence and gate infidelity remain important issues. Here we present a machine-learning approach for discovering such…
Graph similarity search has received considerable attention in many applications, such as bioinformatics, data mining, pattern recognition, and social networks. Existing methods for this problem have limited scalability because of the huge…
Uniform sampling of simple graphs having a given degree sequence is a known problem with exponential complexity in the square of the mean degree. For undirected graphs, randomised approximation algorithms have nonetheless been shown to…
Given strings $P$ and $Q$ the (exact) string matching problem is to find all positions of substrings in $Q$ matching $P$. The classical Knuth-Morris-Pratt algorithm [SIAM J. Comput., 1977] solves the string matching problem in linear time…
We prove upper and lower bounds for the threshold of the q-overlap-k-Exact cover problem. These results are motivated by the one-step replica symmetry breaking approach of Statistical Physics, and the hope of using an approach based on that…
Graph comparison is a fundamental operation in data mining and information retrieval. Due to the combinatorial nature of graphs, it is hard to balance the expressiveness of the similarity measure and its scalability. Spectral analysis…
Short Read Alignment Mapping Metrics (SRAMM): is an efficient and versatile command line tool providing additional short read mapping metrics, filtering, and graphs. Short read aligners report MAPing Quality (MAPQ), but these methods…
The first step in any genome assembly algorithm entails the conversion from the domain of strings and overlaps to the language of graphs and paths, typically using one of the two conventional methods: de Bruijn graphs or overlap graphs.…
Dynamic decision-making under distributional shifts is of fundamental interest in theory and applications of reinforcement learning: The distribution of the environment in which the data is collected can differ from that of the environment…
Fault-tolerant quantum computing relies on Quantum Error Correction, which encodes logical qubits into data and parity qubits. Error decoding is the process of translating the measured parity bits into types and locations of errors. To…
In this paper, we tackle the problem of online semi-supervised learning (SSL). When data arrive in a stream, the dual problems of computation and data storage arise for any SSL method. We propose a fast approximate online SSL algorithm that…