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With the increasing availability of online scholarly databases, publication records can be easily extracted and analysed. Researchers can promptly keep abreast of others' scientific production and, in principle, can select new collaborators…

Social and Information Networks · Computer Science 2020-09-30 Xiancheng Li , Luca Verginer , Massimo Riccaboni , Pietro Panzarasa

Open-sourcing research publications is a key enabler for the reproducibility of studies and the collective scientific progress of a research community. As all fields of science develop more advanced algorithms, we become more dependent on…

Systems and Control · Electrical Eng. & Systems 2023-08-22 Siqi Zhou , Lukas Brunke , Allen Tao , Adam W. Hall , Federico Pizarro Bejarano , Jacopo Panerati , Angela P. Schoellig

This review examines the development of abstractive NLP-based text summarization approaches and compares them to existing techniques for extractive summarization. A brief history of text summarization from the 1950s to the introduction of…

Computation and Language · Computer Science 2024-11-19 Leon Kopitar , Primoz Kocbek , Lucija Gosak , Gregor Stiglic

Automated paper reproduction -- generating executable code from academic papers -- is bottlenecked not by information retrieval but by the tacit knowledge that papers inevitably leave implicit. We formalize this challenge as the progressive…

Artificial Intelligence · Computer Science 2026-03-03 Lehui Li , Ruining Wang , Haochen Song , Yaoxin Mao , Tong Zhang , Yuyao Wang , Jiayi Fan , Yitong Zhang , Jieping Ye , Chengqi Zhang , Yongshun Gong

The increasing volume of scholarly publications requires advanced tools for efficient knowledge discovery and management. This paper introduces ongoing work on a system using Large Language Models (LLMs) for the semantic extraction of key…

Digital Libraries · Computer Science 2025-10-07 Samy Ateia , Udo Kruschwitz , Melanie Scholz , Agnes Koschmider , Moayad Almohaishi

Information extraction is a critical step in the practice of conducting biomedical systematic literature reviews. Extracted structured data can be aggregated via methods such as statistical meta-analysis. Typically highly trained domain…

Human-Computer Interaction · Computer Science 2016-09-06 Yalin Sun , Pengxiang Cheng , Shengwei Wang , Hao Lyu , Matthew Lease , Iain Marshall , Byron C. Wallace

We present a novel system providing summaries for Computer Science publications. Through a qualitative user study, we identified the most valuable scenarios for discovery, exploration and understanding of scientific documents. Based on…

The knowledge contained in academic literature is interesting to mine. Inspired by the idea of molecular markers tracing in the field of biochemistry, three named entities, namely, methods, datasets and metrics are used as AI markers for AI…

Information Retrieval · Computer Science 2020-11-04 Rujing Yao , Yingchun Ye , Ji Zhang , Shuxiao Li , Ou Wu

We present a corpus of 5,000 richly annotated abstracts of medical articles describing clinical randomized controlled trials. Annotations include demarcations of text spans that describe the Patient population enrolled, the Interventions…

Computation and Language · Computer Science 2018-06-13 Benjamin Nye , Junyi Jessy Li , Roma Patel , Yinfei Yang , Iain J. Marshall , Ani Nenkova , Byron C. Wallace

Automatic text summarization tools help users in biomedical domain to acquire their intended information from various textual resources more efficiently. Some of the biomedical text summarization systems put the basis of their sentence…

Computation and Language · Computer Science 2017-05-31 Milad Moradi , Nasser Ghadiri

The automated generation of research workflows is essential for improving the reproducibility of research and accelerating the paradigm of "AI for Science". However, existing methods typically extract merely fragmented procedural components…

Computation and Language · Computer Science 2025-09-24 Heng Zhang , Chengzhi Zhang

Departments within a university are not only administrative units, but also an effort to gather investigators around common fields of academic study. A pervasive challenge is connecting members with shared research interests both within and…

Social and Information Networks · Computer Science 2025-02-12 Art Poon

Large language models (LLMs) are increasingly transforming biomedical discovery and clinical innovation, yet their impact extends far beyond algorithmic revolution-LLMs are restructuring how scientific collaboration occurs, who…

Social and Information Networks · Computer Science 2025-11-04 Lingyao Li , Zhijie Duan , Xuexin Li , Xiaoran Xu , Zhaoqian Xue , Siyuan Ma , Jin Jin

Co-authorship in publications within a discipline uncovers interesting properties of the analysed field. We represent collaboration in academic papers of computer science in terms of differently grained networks, including those…

Social and Information Networks · Computer Science 2015-03-17 Massimo Franceschet

With the increasing use of large language models (LLMs) for generating answers to biomedical questions, it is crucial to evaluate the quality of the generated answers and the references provided to support the facts in the generated…

Computation and Language · Computer Science 2026-02-10 Deepak Gupta , Davis Bartels , Dina Demner-Fushman

Academic and scientific publishing practices have changed significantly in recent years. This paper presents an analysis of 17 million research papers published since 2000 to explore changes in authorship and content practices. It shows a…

Digital Libraries · Computer Science 2025-10-28 Padraig Cunningham , Padhraic Smyth , Barry Smyth

This work investigates public-private research collaboration between Italian universities and domestic industry, applying a bibliometric type of approach. The study is based on an exhaustive listing of all co-authored publications in…

Digital Libraries · Computer Science 2018-11-22 Giovanni Abramo , Ciriaco Andrea D'Angelo , Flavia Di Costa , Marco Solazzi

With an exponentially growing number of scientific papers published each year, advanced tools for exploring and discovering publications of interest are becoming indispensable. To empower users beyond a simple keyword search provided e.g.…

Information Retrieval · Computer Science 2017-06-27 Franziska Horn

The value of biomedical research--a $1.7 trillion annual investment--is ultimately determined by its downstream, real-world impact. Current objective predictors of impact rest on proxy, reductive metrics of dissemination, such as paper…

Accurate systems for extracting Protein-Protein Interactions (PPIs) automatically from biomedical articles can help accelerate biomedical research. Biomedical Informatics researchers are collaborating to provide metaservices and advance the…

Computation and Language · Computer Science 2010-03-18 Siddhartha Jonnalagadda , Graciela Gonzalez
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