Related papers: Onto2Vec: joint vector-based representation of bio…
Biomedical visual question answering (VQA) has been widely studied and has demonstrated significant application value and potential in fields such as assistive medical diagnosis. Despite their success, current biomedical VQA models perform…
In the electronic health record, using clinical notes to identify entities such as disorders and their temporality (e.g. the order of an event relative to a time index) can inform many important analyses. However, creating training data for…
Named entity recognition (NER) identifies typed entity mentions in raw text. While the task is well-established, there is no universally used tagset: often, datasets are annotated for use in downstream applications and accordingly only…
We present an autoencoder that leverages learned representations to better measure similarities in data space. By combining a variational autoencoder with a generative adversarial network we can use learned feature representations in the…
We propose a novel method for hierarchical entity classification that embraces ontological structure at both training and during prediction. At training, our novel multi-level learning-to-rank loss compares positive types against negative…
Recent works on representation learning for graph structured data predominantly focus on learning distributed representations of graph substructures such as nodes and subgraphs. However, many graph analytics tasks such as graph…
NLP pipelines with limited or no labeled data, rely on unsupervised methods for document processing. Unsupervised approaches typically depend on clustering of terms or documents. In this paper, we introduce a novel clustering algorithm,…
Word embedding models such as GloVe rely on co-occurrence statistics from a large corpus to learn vector representations of word meaning. These vectors have proven to capture surprisingly fine-grained semantic and syntactic information.…
Both named entities and keywords are important in defining the content of a text in which they occur. In particular, people often use named entities in information search. However, named entities have ontological features, namely, their…
Ontology alignment is integral to achieving semantic interoperability as the number of available ontologies covering intersecting domains is increasing. This paper proposes OWL2Vec4OA, an extension of the ontology embedding system OWL2Vec*.…
Tables contain valuable knowledge in a structured form. We employ neural language modeling approaches to embed tabular data into vector spaces. Specifically, we consider different table elements, such caption, column headings, and cells,…
We introduce a novel latent vector space model that jointly learns the latent representations of words, e-commerce products and a mapping between the two without the need for explicit annotations. The power of the model lies in its ability…
Vector space methods that measure semantic similarity and relatedness often rely on distributional information such as co--occurrence frequencies or statistical measures of association to weight the importance of particular co--occurrences.…
Topic models aim to reveal latent structures within a corpus of text, typically through the use of term-frequency statistics over bag-of-words representations from documents. In recent years, conceptual entities -- interpretable,…
In this work we address the issue of generic automated disease incidence monitoring on twitter. We employ an ontology of disease related concepts and use it to obtain a conceptual representation of tweets. Unlike previous key word based…
Recently, ontology embeddings representing entities in a low-dimensional space have been proposed for ontology completion. However, the ontology embeddings for concept subsumption prediction do not address the difficulties of similar and…
We consider the problem of Named Entity Recognition (NER) on biomedical scientific literature, and more specifically the genomic variants recognition in this work. Significant success has been achieved for NER on canonical tasks in recent…
We introduce AutoVER, an Autoregressive model for Visual Entity Recognition. Our model extends an autoregressive Multi-modal Large Language Model by employing retrieval augmented constrained generation. It mitigates low performance on…
Because of the increasing number of electronic data, designing efficient tools to retrieve and exploit documents is a major challenge. Current search engines suffer from two main drawbacks: there is limited interaction with the list of…
Co-occurrence statistics based word embedding techniques have proved to be very useful in extracting the semantic and syntactic representation of words as low dimensional continuous vectors. In this work, we discovered that dictionary…