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Biomedical entity linking is the task of identifying mentions of biomedical concepts in text documents and mapping them to canonical entities in a target thesaurus. Recent advancements in entity linking using BERT-based models follow a…

Computation and Language · Computer Science 2021-03-10 Rajarshi Bhowmik , Karl Stratos , Gerard de Melo

The advances in AI-enabled techniques have accelerated the creation and automation of visualizations in the past decade. However, presenting visualizations in a descriptive and generative format remains a challenge. Moreover, current…

Human-Computer Interaction · Computer Science 2024-03-28 Qing Chen , Ying Chen , Ruishi Zou , Wei Shuai , Yi Guo , Jiazhe Wang , Nan Cao

Vector embeddings have been successfully applied in several domains to obtain effective representations of non-numeric data which can then be used in various downstream tasks. We present a novel application of vector embeddings in…

Machine Learning · Computer Science 2024-03-19 Ethan Baron , Bram Janssens , Matthias Bogaert

Most physical or social phenomena can be represented by ontologies where the constituent entities are interacting in various ways with each other and with their environment. Furthermore, those entities are likely heterogeneous and…

Machine Learning · Computer Science 2020-07-23 Amine Laghaout

Accurate property data for chemical elements is crucial for materials design and manufacturing, but many of them are difficult to measure directly due to equipment constraints. While traditional methods use the properties of other elements…

Computation and Language · Computer Science 2025-10-20 Yuanhao Li , Keyuan Lai , Tianqi Wang , Qihao Liu , Jiawei Ma , Yuan-Chao Hu

While deep learning has achieved great success in many fields, one common criticism about deep learning is its lack of interpretability. In most cases, the hidden units in a deep neural network do not have a clear semantic meaning or…

Genomics · Quantitative Biology 2019-06-04 Tianle Ma , Aidong Zhang

Big data solutions are designed to cope with data of huge Volume and wide Variety, that need to be ingested at high Velocity and have potential Veracity issues, challenging characteristics that are usually referred to as the "4Vs of Big…

Artificial Intelligence · Computer Science 2019-04-19 Maximilian Zocholl , Elena Camossi , Anne-Laure Jousselme , Cyril Ray

A critical step in sharing semantic content online is to map the structural data source to a public domain ontology. This problem is denoted as the Relational-To-Ontology Mapping Problem (Rel2Onto). A huge effort and expertise are required…

Artificial Intelligence · Computer Science 2022-12-22 Jiakang Xu , Wolfgang Mayer , HongYu Zhang , Keqing He , Zaiwen Feng

We propose a representation learning framework for medical diagnosis domain. It is based on heterogeneous network-based model of diagnostic data as well as modified metapath2vec algorithm for learning latent node representation. We compare…

Machine Learning · Computer Science 2020-01-24 Karol Antczak

Early prediction of mortality and length of stay(LOS) of a patient is vital for saving a patient's life and management of hospital resources. Availability of electronic health records(EHR) makes a huge impact on the healthcare domain and…

Machine Learning · Computer Science 2020-12-01 Batuhan Bardak , Mehmet Tan

In this paper, we propose Emo2Vec which encodes emotional semantics into vectors. We train Emo2Vec by multi-task learning six different emotion-related tasks, including emotion/sentiment analysis, sarcasm classification, stress detection,…

Computation and Language · Computer Science 2018-09-13 Peng Xu , Andrea Madotto , Chien-Sheng Wu , Ji Ho Park , Pascale Fung

In end-to-end dialogue modeling and agent learning, it is important to (1) effectively learn knowledge from data, and (2) fully utilize heterogeneous information, e.g., dialogue act flow and utterances. However, the majority of existing…

Computation and Language · Computer Science 2019-11-12 Zhuoxuan Jiang , Ziming Huang , Dong Sheng Li , Xian-Ling Mao

Topological representations are rapidly becoming a popular way to capture and encode higher-order interactions in complex systems. They have found applications in disciplines as different as cancer genomics, brain function, and…

When ontologies cover overlapping topics, the overlap can be represented using ontology alignments. These alignments need to be continuously adapted to changing ontologies. Especially for large ontologies this is a costly task often…

Computation and Language · Computer Science 2018-05-24 Matthias Jurisch , Bodo Igler

Feature norm datasets of human conceptual knowledge, collected in surveys of human volunteers, yield highly interpretable models of word meaning and play an important role in neurolinguistic research on semantic cognition. However, these…

Computation and Language · Computer Science 2019-09-02 Steven Derby , Paul Miller , Barry Devereux

Named entity recognition is a challenging task that has traditionally required large amounts of knowledge in the form of feature engineering and lexicons to achieve high performance. In this paper, we present a novel neural network…

Computation and Language · Computer Science 2016-07-20 Jason P. C. Chiu , Eric Nichols

Query optimization has been studied using machine learning, reinforcement learning, and, more recently, graph-based convolutional networks. Ontology, as a structured, information-rich knowledge representation, can provide context,…

Databases · Computer Science 2025-11-11 Songhui Yue , Yang Shao , Sean Hayes

Ontology matching is defined as finding a relationship or correspondence between two or more entities in two or more ontologies. To solve the interoperability problem of the domain ontologies, semantically similar entities in these…

Artificial Intelligence · Computer Science 2024-04-24 Sefika Efeoglu

Tokenization and sub-tokenization based models like word2vec, BERT and the GPTs are the state-of-the-art in natural language processing. Typically, these approaches have limitations with respect to their input representation. They fail to…

Computation and Language · Computer Science 2026-02-26 Felix Schneider , Maria Gogolev , Sven Sickert , Joachim Denzler

Node2vec is a graph embedding method that learns a vector representation for each node of a weighted graph while seeking to preserve relative proximity and global structure. Numerical experiments suggest Node2vec struggles to recreate the…

Machine Learning · Statistics 2023-09-18 Yasuaki Hiraoka , Yusuke Imoto , Killian Meehan , Théo Lacombe , Toshiaki Yachimura
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