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Related papers: Deep Learning for Genomics: A Concise Overview

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Many of the current scientific advances in the life sciences have their origin in the intensive use of data for knowledge discovery. In no area this is so clear as in bioinformatics, led by technological breakthroughs in data acquisition…

Machine Learning · Computer Science 2018-02-28 Davide Bacciu , Paulo J. G. Lisboa , José D. Martín , Ruxandra Stoean , Alfredo Vellido

Numerous cellular functions rely on protein$\unicode{x2013}$protein interactions. Efforts to comprehensively characterize them remain challenged however by the diversity of molecular recognition mechanisms employed within the proteome. Deep…

Biomolecules · Quantitative Biology 2023-12-08 Julia R. Rogers , Gergő Nikolényi , Mohammed AlQuraishi

The linear inverse problem is fundamental to the development of various scientific areas. Innumerable attempts have been carried out to solve different variants of the linear inverse problem in different applications. Nowadays, the rapid…

Signal Processing · Electrical Eng. & Systems 2020-10-30 Yanna Bai , Wei Chen , Jie Chen , Weisi Guo

With the development of computer-assisted techniques, research communities including biochemistry and deep learning have been devoted into the drug discovery field for over a decade. Various applications of deep learning have drawn great…

Machine Learning · Computer Science 2023-03-07 Wenhao Hu , Yingying Liu , Xuanyu Chen , Wenhao Chai , Hangyue Chen , Hongwei Wang , Gaoang Wang

Deep Learning (DL) algorithms hold great promise for applications in the field of computational biophysics. In fact, the vast amount of available molecular structures, as well as their notable complexity, constitutes an ideal context in…

Soft Condensed Matter · Physics 2019-01-07 Marco Giulini , Raffaello Potestio

Genomics are rapidly transforming medical practice and basic biomedical research, providing insights into disease mechanisms and improving therapeutic strategies, particularly in cancer. The ability to predict the future course of a…

Neural and Evolutionary Computing · Computer Science 2016-09-29 Safoora Yousefi , Congzheng Song , Nelson Nauata , Lee Cooper

Deep neural networks have proven to be very effective for computer vision tasks, such as image classification, object detection, and semantic segmentation -- these are primarily applied to color imagery and video. In recent years, there has…

Computer Vision and Pattern Recognition · Computer Science 2020-07-20 Xiong Zhou , Saurabh Prasad

Like any field of empirical science, AI may be approached axiomatically. We formulate requirements for a general-purpose, human-level AI system in terms of postulates. We review the methodology of deep learning, examining the explicit and…

Artificial Intelligence · Computer Science 2018-06-26 Eray Özkural

The field of speech processing has undergone a transformative shift with the advent of deep learning. The use of multiple processing layers has enabled the creation of models capable of extracting intricate features from speech data. This…

Audio and Speech Processing · Electrical Eng. & Systems 2023-05-31 Ambuj Mehrish , Navonil Majumder , Rishabh Bhardwaj , Rada Mihalcea , Soujanya Poria

Quantum deep learning is a research field for the use of quantum computing techniques for training deep neural networks. The research topics and directions of deep learning and quantum computing have been separated for long time, however by…

Quantum Physics · Physics 2021-08-04 Yunseok Kwak , Won Joon Yun , Soyi Jung , Joongheon Kim

Gene finding is the task of identifying the locations of coding sequences within the vast amount of genetic code contained in the genome. With an ever increasing quantity of raw genome sequences, gene finding is an important avenue towards…

Genomics · Quantitative Biology 2025-05-07 Frederikke I. Marin , Dennis Pultz , Wouter Boomsma

Today, deep learning represents the most popular and successful form of machine learning. Deep learning has revolutionised the field of pattern recognition, including biometric recognition. Biometric systems utilising deep learning have…

Computer Vision and Pattern Recognition · Computer Science 2023-03-07 Christian Rathgeb , Jascha Kolberg , Andreas Uhl , Christoph Busch

Deep generative models that learn from the distribution of natural protein sequences and structures may enable the design of new proteins with valuable functions. While the majority of today's models focus on generating either sequences or…

Biomolecules · Quantitative Biology 2024-10-03 Chentong Wang , Sarah Alamdari , Carles Domingo-Enrich , Ava Amini , Kevin K. Yang

The last few decades have seen significant breakthroughs in the fields of deep learning and quantum computing. Research at the junction of the two fields has garnered an increasing amount of interest, which has led to the development of…

Quantum Physics · Physics 2020-05-12 Siddhant Garg , Goutham Ramakrishnan

Deep learning (DL) is one of the fastest growing topics in materials data science, with rapidly emerging applications spanning atomistic, image-based, spectral, and textual data modalities. DL allows analysis of unstructured data and…

Deep learning has sparked a network of mutual interactions between different disciplines and AI. Naturally, each discipline focuses and interprets the workings of deep learning in different ways. This diversity of perspectives on deep…

Machine Learning · Computer Science 2019-08-28 Raul Vicente

Deep Learning (DL) techniques for Natural Language Processing have been evolving remarkably fast. Recently, the DL advances in language modeling, machine translation and paragraph understanding are so prominent that the potential of DL in…

Software Engineering · Computer Science 2020-06-16 Triet H. M. Le , Hao Chen , M. Ali Babar

Standing at the paradigm shift towards data-intensive science, machine learning techniques are becoming increasingly important. In particular, as a major breakthrough in the field, deep learning has proven as an extremely powerful tool in…

Computer Vision and Pattern Recognition · Computer Science 2018-01-09 Xiao Xiang Zhu , Devis Tuia , Lichao Mou , Gui-Song Xia , Liangpei Zhang , Feng Xu , Friedrich Fraundorfer

The success of deep learning algorithms generally depends on large-scale data, while humans appear to have inherent ability of knowledge transfer, by recognizing and applying relevant knowledge from previous learning experiences when…

Machine Learning · Computer Science 2022-01-19 Junguang Jiang , Yang Shu , Jianmin Wang , Mingsheng Long

Researchers have recently achieved significant advances in deep learning techniques, which in turn has substantially advanced other research disciplines, such as natural language processing, image processing, speech recognition, and…