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We solve a hydrodynamic model of active chromatin dynamics, within a confined geometry simulating the cell nucleus. Using both analytical and numerical methods, we describe the behavior of the chromatin polymer driven by the activity of…

Soft Condensed Matter · Physics 2023-05-05 Iraj Eshghi , Alexandra Zidovska , Alexander Y. Grosberg

The drag of turbulent flows can be drastically decreased by addition of small amounts of high molecular weight polymers. While drag reduction initially increases with polymer concentration, it eventually saturates to what is known as the…

Fluid Dynamics · Physics 2018-03-28 George H. Choueiri , Jose M. Lopez , Bjoern Hof

We study structural properties of a ring polymeric melt confined in a film in comparison to a linear counterpart using molecular dynamics simulations. Local structure orderings of ring and linear polymers in the vicinity of the surface are…

Soft Condensed Matter · Physics 2015-10-21 Eunsang Lee , YounJoon Jung

The dynamics of polymers in a random smooth flow is investigated in the framework of the Hookean dumbbell model. The analytical expression of the time-dependent probability density function of polymer elongation is derived explicitly for a…

Chaotic Dynamics · Physics 2009-11-10 A. Celani , S. Musacchio , D. Vincenzi

Emergence and maintenance of polymers with complex sequences is a major question in the study of origins of life. To answer this, we studied a model polymerization reaction, where polymers are synthesized by stepwise ligation from two types…

Biological Physics · Physics 2018-09-19 Yoshiya J. Matsubara , Kunihiko Kaneko

Vortex dynamics in superfluids is investigated in the framework of the nonlinear Schr\"{o}dinger equation. The natural motion of the vortex is of cyclotron type, whose frequency is found to be on the order of phonon velocity divided by the…

Condensed Matter · Physics 2009-10-28 E. Demircan , P. Ao , Q. Niu

Two examples for the interplay between chaotic dynamics and stochastic forces within hydrodynamical systems are considered. The first case concerns the relaxation to equilibrium of a concentration field subject to both chaotic advection and…

Chaotic Dynamics · Physics 2007-05-23 Bruno Eckhardt , Erwan Hascoet , Wolfgang Braun

Understanding how topological constraints affect the dynamics of polymers in solution is at the basis of any polymer theory and it is particularly needed for melts of rings. These polymers fold as crumpled and space-filling objects and,…

Soft Condensed Matter · Physics 2017-11-15 D. Michieletto , N. Nahali , A. Rosa

We present a new numerical model to simulate settling trajectories of discretized individual or a mixture of particles of different geometrical shapes in a quiescent fluid and their flow trajectories in a flowing fluid. Simulations unveiled…

Computational Physics · Physics 2020-06-26 Hakan Başağaoğlu , Sauro Succi , Danielle Wyrick , Justin Blount

The statistical mechanics of a linear non-interacting polymer chain with a large number of monomers is considered with fixed angular momentum. The radius of gyration for a linear polymer is derived exactly by functional integration. This…

Soft Condensed Matter · Physics 2013-05-29 Matthew Brunner , J. M. Deutsch

Polymer brushes normally swell in a good solvent and collapse in a poor solvent. An abnormal response of polymer brushes, so-called co-nonsolvency, is the phenomenon where the brush counter-intuitively collapses in a good solvent mixture.…

Soft Condensed Matter · Physics 2019-08-26 Gyehyun Park , YounJoon Jung

This paper is focused on the fundamental mechanism(s) of viscoelastic turbulence that lead to polymer induced turbulent drag reduction phenomenon. A great challenge in this problem is the computation of viscoelastic turbulent flows, since…

Fluid Dynamics · Physics 2011-11-18 Vassilios Dallas , J. Christos Vassilicos , Geoffrey F. Hewitt

Understanding the role of self-propulsion on the conformational properties of active filamentous objects has relevance in biology. In this context, we consider a flexible bead-spring model polymer for which along with both attractive and…

Soft Condensed Matter · Physics 2022-02-22 Subhajit Paul , Suman Majumder , Wolfhard Janke

We investigate the internal structure of a polymer during collapse from an expanded coil to a compact globule. Collapse is more probable in local regions of high curvature, so a smoothing of the fractal polymer structure occurs that…

Soft Condensed Matter · Physics 2008-11-07 G. E. Crooks , B. Ostrovsky , Y. Bar-Yam

A coarse grained model for flexible polymers end-grafted to repulsive spherical nanoparticles is studied for various chain lengths and grafting densities under good solvent conditions, by Molecular Dynamics methods and density functional…

Soft Condensed Matter · Physics 2015-05-18 Federica Lo Verso , Sergei A. Egorov , Andrey Milchev , Kurt Binder

The role of solvent quality in determining the universal material properties of dilute polymer solutions undergoing steady simple shear flow is examined. A bead-spring chain representation of the polymer molecule is used, and the influence…

Soft Condensed Matter · Physics 2020-07-03 K. Satheesh Kumar , J. Ravi Prakash

In fully developed three dimensional fluid turbulence the fluctuating energy is supplied at large scales, cascades through intermediate scales, and dissipates at small scales. It is the hallmark of turbulence that for intermediate scales,…

Fluid Dynamics · Physics 2013-01-09 Heng-Dong Xi , Eberhard Bodenschatz , Haitao Xu

We numerically study confined channel foam flow around an obstacle using a two-dimensional bubble model, inspired by experiments performed in the same geometry. We systematically vary the polydispersity, the external driving force, and the…

Soft Condensed Matter · Physics 2026-03-24 Bahaa Mazloum , Alexandre Stepanetz , Benjamin Dollet , Misaki Ozawa

The statistical theory of polymers tethered around the inner surface of a cylindrical channel has traditionally employed the assumption that the equilibrium density of the polymers is independent of the azimuthal coordinate. However,…

Soft Condensed Matter · Physics 2015-01-30 D. Osmanovic , M. Kerr-Winter , R. C. Eccleston , B. W. Hoogenboom , I. J. Ford

We study the dynamics of flexible, semiflexible, and self-avoiding polymer chains moving under a Kramers metastable potential. Due to thermal noise, the polymers, initially placed in the metastable well, can cross the potential barrier, but…

Soft Condensed Matter · Physics 2013-12-05 Jaeoh Shin , Timo Ikonen , Mahendra D. Khandkar , Tapio Ala-Nissila , Wokyung Sung