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The purpose of this Note is twofold: First, we introduce the general formalism of evolutionary genetics dynamics involving fitnesses, under both the deterministic and stochastic setups, and chiefly in discrete-time. In the process, we…

Quantitative Methods · Quantitative Biology 2015-05-14 Thierry Huillet

This chapter is an overview of foundational results in the mathematical theory of replicator systems. Its primary aim is to provide a unified framework for the mathematical formalisation of evolutionary processes in the spirit of…

Populations and Evolution · Quantitative Biology 2026-04-08 A. S. Bratus , S. Drozhzhin , T. Yakushkina

We study the adaptation dynamics of an initially maladapted population evolving via the elementary processes of mutation and selection. The evolution occurs on rugged fitness landscapes which are defined on the multi-dimensional genotypic…

Populations and Evolution · Quantitative Biology 2009-11-13 Kavita Jain

The goal of this note is to present a general approach to define the net reproduction function for a large class of nonlinear physiologically structured population models. In particular, we are going to show that this can be achieved in a…

Populations and Evolution · Quantitative Biology 2019-03-06 József Z. Farkas

We study a general setting of neutral evolution in which the population is of finite, constant size and can have spatial structure. Mutation leads to different genetic types ("traits"), which can be discrete or continuous. Under minimal…

Populations and Evolution · Quantitative Biology 2018-11-02 Alex McAvoy , Ben Adlam , Benjamin Allen , Martin A. Nowak

This paper explores a non-linear, non-local model describing the evolution of a single species. We investigate scenarios where the spatial domain is either an arbitrary bounded and open subset of the $n$-dimensional Euclidean space or a…

Analysis of PDEs · Mathematics 2024-03-19 Maciej Tadej

Population dynamics on a rugged landscape is studied analytically and numerically within a simple discrete model for evolution of N individuals in one-dimensional fitness space. We reduce the set of master equations to a single Fokker-Plank…

adap-org · Physics 2015-06-30 Igor Aranson , Lev Tsimring , Valerii Vinokur

This study focuses on open quasispecies systems with competition and death flow, described by modified Eigen and Crow-Kimura models. We examine the evolutionary adaptation process as a reaction to changes in rates. One of the fundamental…

Populations and Evolution · Quantitative Biology 2021-12-01 Igor Samokhin , Tatiana Yakushkina , Dmitry Markin , Alexander S. Bratus

Coevolving and competing species or game-theoretic strategies exhibit rich and complex dynamics for which a general theoretical framework based on finite populations is still lacking. Recently, an explicit mean-field description in the form…

Statistical Mechanics · Physics 2007-05-23 Arne Traulsen , Jens Christian Claussen , Christoph Hauert

We consider a population evolving under mutation and selection. The genotype of an individual is a word of length $\ell$ over a finite alphabet. Mutations occur during reproduction, independently on each locus; the fitness depends on the…

Probability · Mathematics 2017-12-04 Joseba Dalmau

In this paper we study pattern formation arising in a system of a single reaction-diffusion equation coupled with subsystem of ordinary differential equations, describing spatially-distributed growth of clonal populations of precancerous…

Tissues and Organs · Quantitative Biology 2019-05-14 Yuriy Golovaty , Anna Marciniak-Czochra , Mariya Ptashnyk

Evolution by Natural Selection is a process by which progeny inherit some properties from their progenitors with small variation. These properties are subject to Natural Selection and are called adaptive traits and carriers of the latter…

Analysis of PDEs · Mathematics 2024-01-29 Gonzalo Galiano , Yosef Cohen

A branching process in a Markovian environment consists of an irreducible Markov chain on a set of "environments" together with an offspring distribution for each environment. At each time step the chain transitions to a new random…

Probability · Mathematics 2021-06-22 Lila Greco , Lionel Levine

We present a quantitative model for the biological evolution of species body masses within large groups of related species, e.g., terrestrial mammals, in which body mass M evolves according to branching (speciation), multiplicative…

Populations and Evolution · Quantitative Biology 2009-01-22 Aaron Clauset , Sidney Redner

We consider the functional Schrodinger equation for a self interacting scalar field in an expanding geometry. By performing a time dependent scale transformation on the argument of the field we derive a functional Schrodinger equation whose…

General Relativity and Quantum Cosmology · Physics 2009-10-22 F. Braghin , C. Martin , D. Vautherin

We prove the well-posedness of a general evolution reaction-nonlocal diffusion problem under two sets of assumptions. In the first set, the main hypothesis is the Lipschitz continuity of the range kernel and the bounded variation of the…

Analysis of PDEs · Mathematics 2024-01-26 Gonzalo Galiano

We study the question of existence of positive steady states of nonlinear evolution equations. We recast the steady state equation in the form of eigenvalue problems for a parametrised family of unbounded linear operators, which are…

Analysis of PDEs · Mathematics 2019-03-25 Àngel Calsina , József Z. Farkas

We prove that stochastic replicator dynamics can be interpreted as intrinsic Brownian motion on the simplex equipped the Aitchison geometry. As an immediate consequence we derive three approximation results in the spirit of Wong-Zakai…

Probability · Mathematics 2020-08-13 Tobias Lehmann

Most human tumors result from the accumulation of multiple genetic and epigenetic alterations in a single cell. Mutations that confer a fitness advantage to the cell are known as driver mutations and are causally related to tumorigenesis.…

Probability · Mathematics 2010-07-15 Rick Durrett , Jasmine Foo , Kevin Leder , John Mayberry , Franziska Michor

Aging is thought to be a consequence of intrinsic breakdowns in how genetic information is processed. But mounting experimental evidence suggests that aging can be slowed. To help resolve this mystery, I derive a mortality equation which…

Populations and Evolution · Quantitative Biology 2022-09-01 Thomas Fink
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