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Thanks to novel, powerful brain activity recording techniques, we can create data-driven models from thousands of recording channels and large portions of the cortex, which can improve our understanding of brain-states neuromodulation and…

Calcium imaging is a technique for observing neuron activity as a series of images showing indicator fluorescence over time. Manually segmenting neurons is time-consuming, leading to research on automated calcium imaging segmentation…

Computer Vision and Pattern Recognition · Computer Science 2017-07-21 Aleksander Klibisz , Derek Rose , Matthew Eicholtz , Jay Blundon , Stanislav Zakharenko

The use of multiple camera technologies in a combined multimodal monitoring system for plant phenotyping offers promising benefits. Compared to configurations that only utilize a single camera technology, cross-modal patterns can be…

Computer Vision and Pattern Recognition · Computer Science 2024-07-04 Eric Stumpe , Gernot Bodner , Francesco Flagiello , Matthias Zeppelzauer

Medical Informatics and the application of modern signal processing in the assistance of the diagnostic process in medical imaging is one of the more recent and active research areas today. This thesis addresses a variety of issues related…

Computer Vision and Pattern Recognition · Computer Science 2009-10-20 Harris Georgiou

We study the dynamics of intracellular calcium oscillations in the presence of proteins that bind calcium on multiple sites and that are generally believed to act as passive calcium buffers in cells. We find that multisite calcium-binding…

Subcellular Processes · Quantitative Biology 2015-05-14 Roberto Chignola , Alessio Del Fabbro , Edoardo Milotti

We present a fast learning-based algorithm for deformable, pairwise 3D medical image registration. Current registration methods optimize an objective function independently for each pair of images, which can be time-consuming for large…

Computer Vision and Pattern Recognition · Computer Science 2019-03-14 Guha Balakrishnan , Amy Zhao , Mert R. Sabuncu , John Guttag , Adrian V. Dalca

This study presents a high-accuracy, efficient, and physically induced method for 3D point cloud registration, which is the core of many important 3D vision problems. In contrast to existing physics-based methods that merely consider…

Computer Vision and Pattern Recognition · Computer Science 2023-02-03 Zhao Mingyang , Ma Lei , Jia Xiaohong , Yan Dong-Ming , Huang Tiejun

In this paper we introduce a fully end-to-end approach for multi-spectral image registration and fusion. Our method for fusion combines images from different spectral channels into a single fused image by different approaches for low and…

Computer Vision and Pattern Recognition · Computer Science 2021-10-06 Nati Ofir , Shai Silberstein , Dani Rozenbaum , Yosi Keller , Sharon Duvdevani Bar

With the rapid growth of neuroimaging technologies, a great effort has been dedicated recently to investigate the dynamic changes in brain activity. Examples include time course calcium imaging and dynamic brain functional connectivity. In…

Methodology · Statistics 2020-08-31 Wei Hu , Tianyu Pan , Dehan Kong , Weining Shen

Calcium imaging allows for the parallel measurement of large neuronal populations in a spatially resolved and minimally invasive manner, and has become a gold-standard for neuronal functionality. While deep generative models have been…

Neurons and Cognition · Quantitative Biology 2025-10-02 Berta Ros , Mireia Olives-Verger , Caterina Fuses , Josep M Canals , Jordi Soriano , Jordi Abante

Image registration is used in many medical image analysis applications, such as tracking the motion of tissue in cardiac images, where cardiac kinematics can be an indicator of tissue health. Registration is a challenging problem for deep…

Image and Video Processing · Electrical Eng. & Systems 2025-06-25 Benjamin Graham

In this paper, we argue that the problem of registering two sets of functional data, where the underlying mean function has sharp features, is not properly addressed by methods designed to align a bunch of growth curves data. We provide a…

Methodology · Statistics 2017-12-19 Dibyendu Bhaumik , Radhendushka Srivastava , Debasis Sengupta

Non-rigid registration is a necessary but challenging task in medical imaging studies. Recently, unsupervised registration models have shown good performance, but they often require a large-scale training dataset and long training times.…

Computer Vision and Pattern Recognition · Computer Science 2021-04-22 Heejung Park , Gyeong Min Lee , Soopil Kim , Ga Hyung Ryu , Areum Jeong , Sang Hyun Park , Min Sagong

Computerized registration between maxillofacial cone-beam computed tomography (CT) images and a scanned dental model is an essential prerequisite in surgical planning for dental implants or orthognathic surgery. We propose a novel method…

Computer Vision and Pattern Recognition · Computer Science 2021-01-26 Minyoung Chung , Jingyu Lee , Wisoo Song , Youngchan Song , Il-Hyung Yang , Jeongjin Lee , Yeong-Gil Shin

Real-time 3D navigation during minimally invasive procedures is an essential yet challenging task, especially when considerable tissue motion is involved. To balance image acquisition speed and resolution, only 2D images or low-resolution…

Computer Vision and Pattern Recognition · Computer Science 2018-01-03 Xiao-Yun Zhou , Guang-Zhong Yang , Su-Lin Lee

Nonrigid registration is conventionally divided into point set registration, which aligns sparse geometries, and image registration, which aligns continuous intensity fields on regular grids. However, this dichotomy creates a critical…

Machine Learning · Statistics 2026-03-24 Osamu Hirose , Emanuele Rodola

Images taken at different times or positions undergo transformations such as rotation, scaling, skewing, and more. The process of aligning different images which have undergone transformations can be done via registration. Registration is…

Image and Video Processing · Electrical Eng. & Systems 2021-04-27 Eduard F. Durech

We introduce a new method for non-rigid registration of 3D human shapes. Our proposed pipeline builds upon a given parametric model of the human, and makes use of the functional map representation for encoding and inferring shape maps…

Computer Vision and Pattern Recognition · Computer Science 2018-07-30 Riccardo Marin , Simone Melzi , Emanuele Rodolà , Umberto Castellani

Deformable registration consists of finding the best dense correspondence between two different images. Many algorithms have been published, but the clinical application was made difficult by the high calculation time needed to solve the…

Computer Vision and Pattern Recognition · Computer Science 2021-11-25 Théo Estienne , Maria Vakalopoulou , Enzo Battistella , Theophraste Henry , Marvin Lerousseau , Amaury Leroy , Nikos Paragios , Eric Deutsch

Point cloud registration is important in computer-aided interventions (CAI). While learning-based point cloud registration methods have been developed, their clinical application is hampered by issues of generalizability and explainability.…

Computer Vision and Pattern Recognition · Computer Science 2025-11-24 Wanwen Chen , Qi Zeng , Carson Studders , Jamie J. Y. Kwon , Emily H. T. Pang , Eitan Prisman , Septimiu E. Salcudean