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Networks have become a key approach to understanding systems of interacting objects, unifying the study of diverse phenomena including biological organisms and human society. One crucial step when studying the structure and dynamics of…
Finding potential research collaborators is a challenging task, especially in today's fast-growing and interdisciplinary research landscape. While traditional methods often rely on observable relationships such as co-authorships and…
When faced with learning a set of inter-related tasks from a limited amount of usable data, learning each task independently may lead to poor generalization performance. Multi-Task Learning (MTL) exploits the latent relations between tasks…
A wide range of complex systems can be modeled as networks with corresponding constraints on the edges and nodes, which have been extensively studied in recent years. Nowadays, with the progress of information technology, systems that…
Modern network analysis often involves multi-layer network data in which the nodes are aligned, and the edges on each layer represent one of the multiple relations among the nodes. Current literature on multi-layer network data is mostly…
Complex networks contain complete subgraphs such as nodes, edges, triangles, etc., referred to as simplices and cliques of different orders. Notably, cavities consisting of higher-order cliques play an important role in brain functions.…
Random walks can reveal communities or clusters in networks, because they are more likely to stay within a cluster than leave it. Thus, one family of community detection algorithms uses random walks to measure distance between pairs of…
Hub structure, characterized by a few highly interconnected nodes surrounded by a larger number of nodes with fewer connections, is a prominent topological feature of biological brains, contributing to efficient information transfer and…
In medical documents, it is possible that an entity of interest not only contains a discontiguous sequence of words but also overlaps with another entity. Entities of such structures are intrinsically hard to recognize due to the large…
Recent research on network embedding in hyperbolic space have proven successful in several applications. However, nodes in real world networks tend to interact through several distinct channels. Simple aggregation or ignorance of this…
This paper presents a novel spectral algorithm with additive clustering designed to identify overlapping communities in networks. The algorithm is based on geometric properties of the spectrum of the expected adjacency matrix in a random…
Biological functions are carried out by groups of interacting molecules, cells or tissues, known as communities. Membership in these communities may overlap when biological components are involved in multiple functions. However, traditional…
Community structure is a typical property of many real-world networks, and has become a key to understand the dynamics of the networked systems. In these networks most nodes apparently lie in a community while there often exists a few nodes…
The goal of co-clustering is to simultaneously identify a clustering of rows as well as columns of a two dimensional data matrix. A number of co-clustering techniques have been proposed including information-theoretic co-clustering and the…
Many real-world networks can be modeled by networks of interacting agents. Analysis of these interactions can reveal fundamental properties from these networks. Estimating the amount of collaboration in a network corresponding to…
Brains learn to represent information from a large set of stimuli, typically by weak supervision. Unsupervised learning is therefore a natural approach for exploring the design of biological neural networks and their computations.…
Many methods have been proposed for community detection in networks, but most of them do not take into account additional information on the nodes that is often available in practice. In this paper, we propose a new joint community…
We propose a new multi-network-based strategy to integrate different layers of genomic information and use them in a coordinate way to identify driving cancer genes. The multi-networks that we consider combine transcription factor…
We formulate a novel technique for the detection of functional clusters in discrete event data. The advantage of this algorithm is that no prior knowledge of the number of functional groups is needed, as our procedure progressively combines…
Maximal clique enumeration (MCE) is a fundamental problem in graph theory and is used in many applications, such as social network analysis, bioinformatics, intelligent agent systems, cyber security, etc. Most existing MCE algorithms focus…