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The reaction-diffusion master equation (RDME) is a lattice stochastic reaction-diffusion model that has been used to study spatially distributed cellular processes. The RDME is often interpreted as an approximation to spatially-continuous…

Numerical Analysis · Mathematics 2013-08-05 Samuel A Isaacson

We consider general multi-species models of reaction diffusion processes and obtain a set of constraints on the rates which give rise to closed systems of equations for correlation functions. Our results are valid in any dimension and on…

Statistical Mechanics · Physics 2009-11-07 Vahid Karimipour

We study the out-of-equilibrium dynamics induced by quantum quenches in quadratic Hamiltonians featuring both short- and long-range interactions. The spreading of correlations in the presence of algebraic decaying interactions,…

Statistical Mechanics · Physics 2016-09-06 Lorenzo Cevolani , Giuseppe Carleo , Laurent Sanchez-Palencia

We investigate the response of a one-dimensional Bose gas to a slow increase of its interaction strength. We focus on the rich dynamics of equal-time single-particle correlations treating the Lieb-Liniger model within a bosonization…

Quantum Gases · Physics 2016-09-27 Jean-Sebastien Bernier , Roberta Citro , Corinna Kollath , Edmond Orignac

An extension of the Kinetic Ising model with nonuniform coupling constants on a one-dimensional lattice with boundaries is investigated, and the relaxation of such a system towards its equilibrium is studied. Using a transfer matrix method,…

Statistical Mechanics · Physics 2010-10-20 Mohammad Khorrami , Amir Aghamohammadi

The chemical master equation (CME) is the exact mathematical formulation of chemical reactions occurring in a dilute and well-mixed volume. The reaction-diffusion master equation (RDME) is a stochastic description of reaction-diffusion…

Chemical Physics · Physics 2016-06-22 Stephen Smith , Ramon Grima

The source term in a reaction-diffusion system, in general, does not involve explicit time dependence. A class of self-limiting growth models dealing with animal and tumor growth and bacterial population in a culture, on the other hand are…

Biological Physics · Physics 2009-11-07 Sandip Kar , Suman Kumar Banik , Deb Shankar Ray

We study analytically the dynamics and the micro-structural changes of a host medium caused by a driven tracer particle moving in a confined, quiescent molecular crowding environment. Imitating typical settings of active micro-rheology…

Statistical Mechanics · Physics 2016-03-17 O. Bénichou , P. Illien , G. Oshanin , A. Sarracino , R. Voituriez

We study a kinetically constrained lattice glass model in which continuous local densities are randomly redistributed on neighbouring sites with a kinetic constraint that inhibits the process at high densities, and a random bias accounting…

Disordered Systems and Neural Networks · Physics 2007-05-23 Eric Bertin , Jean-Philippe Bouchaud , Francois Lequeux

Systems switching between different dynamical phases is an ubiquitous phenomenon. The general understanding of such a process is limited. To this end, we present a general expression that captures fluctuations of a system exhibiting a…

Statistical Mechanics · Physics 2024-12-05 Ion Santra , Kristian Stølevik Olsen , Deepak Gupta

In a reaction-diffusion system, fluctuations in both diffusion and reaction events, have important effects on the steady-state statistics of the system. Here, we argue through extensive lattice simulations, mean-field type arguments, and…

Soft Condensed Matter · Physics 2013-06-12 Fernando Peruani , Chiu Fan Lee

Derivation of macroscopic models for advection-diffusion processes in the presence of dominant heterogeneous (e.g., surface) reactions using homogenisation theory or volume averaging is often deemed unfeasible due to the strong coupling…

Analysis of PDEs · Mathematics 2020-06-24 Federico Municchi , Matteo Icardi

We analyze the propagation of correlations after a sudden interaction change in a strongly interacting quantum system in contact with an environment. In particular, we consider an interaction quench in the Bose-Hubbard model, deep within…

Quantum Gases · Physics 2018-03-07 Jean-Sebastien Bernier , Ryan Tan , Lars Bonnes , Chu Guo , Dario Poletti , Corinna Kollath

Rate-equation models are a widely-used and inexpensive tool for the simulation of interstellar chemistry under a range of physical conditions. However, their application to grain-surface chemical systems necessitates a number of simplifying…

Astrophysics of Galaxies · Physics 2017-05-24 Eric R. Willis , Robin T. Garrod

Diffusion-mediated surface phenomena are crucial for human life and industry, with examples ranging from oxygen capture by lung alveolar surface to heterogeneous catalysis, gene regulation, membrane permeation and filtration processes.…

Statistical Mechanics · Physics 2020-08-19 Denis S. Grebenkov

Reaction-diffusion models have been used over decades to study biological systems. In this context, evolution equations for probability distribution functions and the associated stochastic differential equations have nowadays become…

Statistical Mechanics · Physics 2018-10-09 C. Escudero , S. B. Yuste , E. Abad , F. Le Vot

We adopt a diffusive-Gutzwiller approach to investigate a phase transition in a quadratically driven-dissipative Bose-Hubbard lattice. Diffusive trajectories may lead to lower average entanglement as compared to jump-like trajectories and…

Quantum Physics · Physics 2017-12-05 Eduardo Mascarenhas

We study front propagation in the reversible reaction-diffusion system A + A <-> A on a 1-d lattice. Extending the idea of leading particle in studying the motion of the front we write a master equation in the stochastically moving frame…

Statistical Mechanics · Physics 2009-11-11 Niraj Kumar , Goutam Tripathy

Reaction-diffusion systems with reversible reactions generically display power-law relaxation towards chemical equilibrium. In this work we investigate through numerical simulations aging processes that characterize the non-equilibrium…

Statistical Mechanics · Physics 2011-06-10 Nasrin Afzal , Justin Waugh , Michel Pleimling

A diffusion-limited aggregation process, in which clusters coalesce by means of 3-particle reaction, A+A+A->A, is investigated. In one dimension we give a heuristic argument that predicts logarithmic corrections to the mean-field asymptotic…

Condensed Matter · Physics 2009-10-22 P. L. Krapivsky
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