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Active semiflexible filament collectives, ranging from motor-driven cytoskeletal filaments to slender organisms such as cyanobacteria and worm aggregates, abound in nature. Yet how activity and flexibility jointly govern their organization,…

Soft Condensed Matter · Physics 2025-10-21 Twan Hooijschuur , Ehsan Irani , Antoine Deblais , Sara Jabbari-Farouji

We study the three-dimensional spontaneous flow transition of an active nematic in an infinite slab geometry using a combination of numerics and analytics. We show that it is determined by the interplay of two eigenmodes -- called S- and…

Soft Condensed Matter · Physics 2023-10-31 Vincenzo J. Pratley , Enej Caf , Miha Ravnik , Gareth P. Alexander

By employing Molecular Dynamics computer simulations, the phase behavior of systems of rodlike particles with varying degree of internal flexibility has been traced from the perfectly rigid rod limit till very flexible particles, and from…

Soft Condensed Matter · Physics 2009-11-13 Giorgio Cinacchi , Luca De Gaetani

Collective behavior of self-propelled particles is observed on a microscale for swimmers such as sperm and bacteria as well as for protein filaments in motility assays. The properties of such systems depend both on their dimensionality and…

Soft Condensed Matter · Physics 2014-01-07 Masoud Abkenar , Kristian Marx , Thorsten Auth , Gerhard Gompper

We investigate the statistical behavior of a system comprising fore-aft symmetric rods confined between two vertically vibrating plates using numerical simulations closely resembling the experimental setup studied by Narayan et al., Science…

Soft Condensed Matter · Physics 2024-08-20 Abhishek Sharma , Harsh Soni

The isotropic-nematic phase behavior of length polydisperse hard rods with arbitrary length distributions is calculated. Within a numerical treatment of the polydisperse Onsager model using the Gaussian trial function Ansatz we determine…

Soft Condensed Matter · Physics 2012-07-17 H. H. Wensink , G. J. Vroege

We present computer simulations of long thin hard spherocylinders in a narrow planar slit. We observe a transition from the isotropic to a nematic phase with quasi-long-range orientational order upon increasing the density. This phase…

Soft Condensed Matter · Physics 2009-11-10 Marco Cosentino Lagomarsino , Marjolein Dijkstra , Marileen Dogterom

We theoretically study the nematic ordering transition of rods that are able to elastically adjust their mutually excluded volumes. The model rods, which consist of a hard core surrounded by a deformable shell, mimic the structure of…

Soft Condensed Matter · Physics 2009-11-11 K. Shundyak , R. van Roij , P. van der Schoot

We perform Monte Carlo simulations of a three-dimensional spin system with a Hamiltonian which contains only four-spin interaction term. This system describes random surfaces with extrinsic curvature - gonihedric action. We study the…

Condensed Matter · Physics 2009-11-07 G. Koutsoumbas , G. K. Savvidy

A system of hard rectangles of size $m\times mk$ on a square lattice undergoes three entropy driven phase transitions with increasing density for large enough aspect ratio $k$: first from a low density isotropic to an intermediate density…

Statistical Mechanics · Physics 2015-01-28 Joyjit Kundu , R. Rajesh

The isotropic-nematic (I-N) phase transition in a system of long straight rigid rods of length k on square lattices is studied by combining Monte Carlo simulations and theoretical analysis. The process is analyzed by comparing the…

Statistical Mechanics · Physics 2009-11-13 D. H. Linares , F. Roma , A. J. Ramirez-Pastor

Isotropic-Nematic and Nematic-Nematic transitions from a homogeneous base state of a suspension of high aspect ratio, rod-like magnetic particles are studied for both Maier-Saupe and the Onsager excluded volume potentials. A combination of…

Soft Condensed Matter · Physics 2009-11-11 A. Gopinath , L. Mahadevan , R. C. Armstrong

We study the spatio-temporal dynamics of a model of polar active fluid in two dimensions. The system exhibits a transition from an isotropic to a polarized state as a function of density. The uniform polarized state is, however, unstable…

Soft Condensed Matter · Physics 2011-12-08 Luca Giomi , M. Cristina Marchetti

The non-equilibrium phase transition in driven two-dimensional Ising models with two different geometries is investigated using Monte Carlo methods as well as analytical calculations. The models show dissipation through fluctuation induced…

Statistical Mechanics · Physics 2012-05-23 Sebastian Angst , Alfred Hucht , Dietrich E. Wolf

Recently, Tavarone et al. (J. Chem. Phys. 143, 114505 (2015)) discussed phase behavior of zig-zag and bow-shaped particles composed of three needles. The authors presented very interesting results of extensive Monte Carlo simulations with…

Soft Condensed Matter · Physics 2018-04-18 Paweł Karbowniczek

Cyclic transitions between active and passive states are central to many natural and synthetic systems, ranging from light-driven active particles to animal migrations. Here, we investigate a minimal model of self-propelled Brownian…

Soft Condensed Matter · Physics 2025-01-28 Ye Zhang , Duanduan Wan

Using grand canonical Monte Carlo (GCMC) simulations, we investigate the isotropic-nematic phase transition for hard rods of size Lx1x1 on a 3D cubic lattice. We observe such a transition for L >= 6. For L = 6, the nematic state has a…

Soft Condensed Matter · Physics 2017-08-02 A. Gschwind , M. Klopotek , Y. Ai , M. Oettel

Monte Carlo simulations and finite-size scaling analysis have been carried out to study the critical behavior and universality for the isotropic-nematic phase transition in a system of long straight rigid rods of length $k$ ($k$-mers) on…

Statistical Mechanics · Physics 2009-11-13 D. A. Matoz-Fernandez , D. H. Linares , A. J. Ramirez-Pastor

We analyse the effect of a continuous spread of particle lengths on the phase behavior of rodlike particles, using the Onsager theory of hard rods. Our aim is to establish whether ``unusual'' effects such as isotropic-nematic-nematic…

Soft Condensed Matter · Physics 2010-12-14 Alessandro Speranza , Peter Sollich

We study numerically and analytically a model of self-propelled polar disks on a substrate in two dimensions. The particles interact via isotropic repulsive forces and are subject to rotational noise, but there is no aligning interaction.…

Soft Condensed Matter · Physics 2014-02-24 Yaouen Fily , M. Cristina Marchetti
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